BAC Information

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BAC

Clone NameMSMg01-321I03
Chromosome16 (Build37)
Map Location 78,742,941 - 78,743,271
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik
Downstream geneChodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321I03.T7 (MSMg01no321_i03.b1)MSMg01-321I03.TJ (MSMg01no321_i03.g1)
ACCAG440458
length721716
length of high quality
(start - end)
---332 (73 - 404)
definitionCHROMAT_FILE: MSMg01no321_i03.b1 PHD_FILE: MSMg01no321_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:16 2005CHROMAT_FILE: MSMg01no321_i03.g1 PHD_FILE: MSMg01no321_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXX
NCCCCGATGCAGTNGGAGGCCTGGCGGCCGCCTGGTCAAAAAAGGGAGGT
GAACTATAGAATTTTCTGAGGAATTCCAAGTGAAATGGGTGAAGAGGTAC
AATCTCAGGAGAGGGGATTGTAACCCTTCACTCTGCCTTAATTCCTTCTT
CCAAGTGCATCTGAAACATGGAGTCAGGCACAAAAGCCAACTTAGCATCC
ATATATCCAAGAAAAGAGAAAAATTTGGAGGAAGGGGAAAACATTTACTA
AATGTTCTCCAATTAAAGTATCCTACGCCCGCCCCTTCCCCGCATGTACC
TAGACAAAAGAAAGCTTGCTTTGTTATAAAAGGTTCTTTGGCTTGCATTC
AAGATGCATTAAAATAAAATGGCCTTAATTTATAAAATGGTATGAAATTT
GATGGCCTATAACAGTCACCCCCCAGAAAAAATAATCCTACCATAGCCTA
GAAGCAATTGTGCAAAGCATACCTGCAAAGCGCTAAGATGGCTTTGGGTG
TAAAATTGGAAAAATGCCAATGAAGCCCTTTTATCAGCGAGCATAGGATT
TTACTGCGGATACTCGAGATATTTCAACAGAAAATTAATTAGTATTCCCC
TGAACATAAATCTCCACAGCACTGGCTAAAATGCCAATTTTTTAACCACT
CCCCCTTAAAGCCTCCCATATTAATTATAATTGATTTTTGCCTCTGCTTT
GGTAAATGGCCGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_i03.g1 MSMg01no321_i03.g1 CHROMAT_FILE:
MSMg01no321_i03.g1 PHD_FILE: MSMg01no321_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:16 2005
         (332 letters)



>mm_chr16_78742741_78743472
          Length = 732

 Score =  594 bits (307), Expect = e-174
 Identities = 325/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccaagtgaaatgggtgaagaggtacaatctcaggagaggggattgtaacccttcact 60
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 531 attccaagtgaaatgggtgaagaggtccaatctcaggagaggggattataacccttcact 472

                                                                       
Query: 61  ctgccttaattccttcttccaagtgcatctgaaacatggagtcaggcacaaaagccaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctgccttaattccttcttccaagtgcatctgaaacatggagtcaggcacaaaagccaact 412

                                                                       
Query: 121 tagcatccatatatccaagaaaagagaaaaatttggaggaaggggaaaacatttactaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tagcatccatatatccaagaaaagagaaaaatttggaggaaggggaaaacatttactaaa 352

                                                                       
Query: 181 tgttctccaattaaagtatcctacgcccgccccttccccgcatgtacctagacaaaagaa 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgttctccaattaaagtatcttacgcccgccccttccccgcatgtacctagacaaaagaa 292

                                                                       
Query: 241 agcttgctttgttataaaaggttctttggcttgcattcaagatgcattaaaataaaatgg 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agcttgctttgaaataaaaggttctttggcttgcattcaagatgcattaaaataaaatgg 232

                                          
Query: 301 ccttaatttataaaatggtatgaaatttgat 331
            ||||||||||||||||||||||||||||||
Sbjct: 231 gcttaatttataaaatggtatgaaatttgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)