BAC Information

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BAC

Clone NameMSMg01-322K04
Chromosome16 (Build37)
Map Location 9,579,560 - 9,579,846
singlet/doubletsinglet
Overlap geneGrin2a
Upstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneLOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322K04.T7 (MSMg01no322_k04.b1)MSMg01-322K04.TJ (MSMg01no322_k04.g1)
ACCAG441277AG441278
length715726
length of high quality
(start - end)
244 (428 - 671)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no322_k04.b1 PHD_FILE: MSMg01no322_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:38 2005CHROMAT_FILE: MSMg01no322_k04.g1 PHD_FILE: MSMg01no322_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAAATCCGCGGAATTCAAGAA
ATTTCAAAAAGATATTCACCATGATCAAGTAGGTTTCATTCCAGAGATTC
AGGGATAGTTCACTTTATAAAAATCAATGTAATCAATAAATAAACTGAAA
GAAACAAAAAGACACATGACAAAATTCAATACCTCTTCATGATAAAAGTC
CTAGAGATATTACTAAAGACATAATTAAAGACAATAAAGGCAATTTATAG
TAAGCTATAGCCAACATCAAACTAAATGGAAAGAAATTTAAAATAATTCC
ACTAAAATCATGAACAAGAAAAGTCTTTCCACTCTATTTATTCATTATAT
TAATTGATATCTCCCCCCCACCCACAAGAAAACTGAAGGAAATCAAGGGG
TAAAATTTGCAAAGGAAGAAAAAAAAGTATCGTTATTTTTAGTTGATAGG
ATAGTATGAATAAATGATTGCAAAAATTCCACCAGGAAATTCCTACAGAT
TATAAACACTTTTTACAAAACGAAAAGATACAAGATTAACTAAAAAATCA
GTAGCCCTCTGTGGTGGTTTGAATAGGTATTTTTCTTGTAGACTCATGTG
TTTGAATGCTTAGCCCAGAGAGTGGAACTATTAGGAGGTGGGATCTTGTT
GGAGTAGGTGTGTTCTGTGTTAATAAATGNGTTTCTTGTGGATTAAGTTT
TTCATTCCTCTATTT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTCTTTCTCTCTCTCTATGACT
CTCTCAAGAAATTCATACTTCACCTTTGCAGGTAAAGCTCAGATGGGCAA
GCAACTGCACTCCAGTGTCTGCTGTTGATGTATGCTTTTTTTGTCCCTCA
CAGGGCATCTACAGTTGCATCCATGGAGTGCACATTGAAGAAAAGAAGAA
GTCTCCAGACTTCAATCTGACTGGGTCACAGAGCAACATGCTAAAGCTTC
TCCGCTCAGCTAAAAACATCTCCAACATGTCCAACATGAACTCCTCGCGA
ATGGACTCACCCAATTTATCTGCTGACTCCCTCCAAAGAGGCTCACTTAT
TGTGGACATGGTTTCAGACCACCCAAATTTGATATACTCAGATAACAGGT
CCTTTCAAGGGAAGGACAGTATATTTGGAGAAAACATGAATGAACTGCAA
ACATTTGTGGCCAACAGGCACAAGGATAGTCTTAGTAACTATGTGTTTCA
GGGACAGCATCCTCTCACTCTCAATGAGTCCAACCCCAACACAGTGGAGG
TGGCTGTCAGCACTGAATCCAAAGGGAACTCCCGACCCCGGCAGCTTTGG
AAGAAATCCATGGAGTCTCTACGCCAGGATTCTCTAAACCAGAACCCAGT
CTCCCAGAGGGATGAGAAGACTGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_k04.g1 MSMg01no322_k04.g1 CHROMAT_FILE:
MSMg01no322_k04.g1 PHD_FILE: MSMg01no322_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:38 2005
         (287 letters)



>mm_chr16_9579360_9580046
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctttctctctctctatgactctctcaagaaattcatacttcacctttgcaggtaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 487 cactctttctctctctctatgactctctcaagaaattcatacttcaactttgcaggtaaa 428

                                                                       
Query: 61  gctcagatgggcaagcaactgcactccagtgtctgctgttgatgtatgctttttttgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctcagatgggcaagcaactgcactccagtgtctgctgttgatgtatgctttttttgtcc 368

                                                                       
Query: 121 ctcacagggcatctacagttgcatccatggagtgcacattgaagaaaagaagaagtctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctcacagggcatctacagttgcatccatggagtgcacattgaagaaaagaagaagtctcc 308

                                                                       
Query: 181 agacttcaatctgactgggtcacagagcaacatgctaaagcttctccgctcagctaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agacttcaatctgactgggtcacagagcaacatgctaaagcttctccgctcagctaaaaa 248

                                                          
Query: 241 catctccaacatgtccaacatgaactcctcgcgaatggactcaccca 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 catctccaacatgtccaacatgaactcctcgcgaatggactcaccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)