BAC Information

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BAC

Clone NameMSMg01-323G05
Chromosome16 (Build37)
Map Location 76,772,053 - 76,928,300
singlet/doubletdoublet
Overlap gene1700063K16Rik
Upstream geneLOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
Downstream geneLOC665120, Usp25, 2810055G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323G05.T7 (MSMg01no323_g05.b1)MSMg01-323G05.TJ (MSMg01no323_g05.g1)
ACCAG441824AG441825
length1,2061,174
length of high quality
(start - end)		711 (87 - 797)720 (134 - 853)
definitionCHROMAT_FILE: MSMg01no323_g05.b1 PHD_FILE: MSMg01no323_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:52 2005CHROMAT_FILE: MSMg01no323_g05.g1 PHD_FILE: MSMg01no323_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,927,594 - 76,928,300)(76,772,053 - 76,772,772)
sequence
NCCCGTCTTTTNNNNNNCCATTGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCCAGTCCCTGCTGAACCGTATAAGCCAGGCCATTTAGCTCC
TCCAGGCAGAGGGAACCTACATCCCAAATCACAAGAGTCAACAGGTTCAG
GGGCAGGGTGAGGGGGTGAGGCATTGCTCAAAATTCCCTAGAAAACAAGT
CTAGTAGCAGGAGTGAGGCTAGGCTCTGCTTCTTCTGTTAAACACCACAG
AAATTGCTTAGTATTTTCGAAGGTCTGATGGGTCTGTTTTCTTTTAATTT
AGGAGCAATAGTAATAATAATAGTAATAATAATAATAGTAACAATAATAA
TGAGTCGGCATCTTTTTCAAATACTCAGGTTTCAGCTTTCACCAAAATGT
CTAGAGTTTTCTCTGCTCAATAACTAACAGTCTTCATTATAATAGTTTTA
TGAACTATTTTTTTCTTGAATTCTTCTGCTCCTATGCCTACTGTTATATG
AAGTAACTTCAAGCCAAATCTGATATCAGATTCCTTGAGTTAGCAAGCTT
TTTGTGCTCAGTGTGGAAGCAAGTGCTGGGGAAAAGCTAATTAAAATGGC
AGAGACCAGACTCTTCCTTTAATGATGCTTTCTTGTCAATCATTTGGTTT
ATTTCAGTTAATGTAGGGCGTTCCTTTGTGGTGCAGCCTACCTTGGAGCC
TCCCACCATGCTGTCTCAGCACGCCCATTGCTAGGATTACAGGCCCAGGC
CACCACACCCAGCTAAGGATTGTTGAATTGAAACAGAATAGTGTTATATT
CAGAGCGATCCATTCCACAGGTCTTTTTGCATGGTATTTTTATGGTGTTT
CCTACGTGCTTCTTCAGAAAGGGATAATATGCCTTTATGAAAAAAAATTG
CTTGGCAAATTTACTAAAATTTGTGTTCTCAGCCTATACAAAACCGGTTG
TATTGGGGCCCCACTGAATTGAGGAAAAAAGTTTATAAGTAAACATGTTT
AGCGCCTTTTGTAATGGGAACCCTTTTTTTATAATTTCCCCACAAAAAAA
TTTTAAAAAAAACTTGCTTTGTTGTTTTCTTTAAAAAAAAAAAAAAACCA
TGGGAATTCTCCCCTGGCTACCCCCGGGACCCTGAAACAAAAAAATAAAT
ACCCCCTCCCCCCACCTTGAATTAAACTTTCCCCTCCCCGGAAAAGAAAT
TAAAAA

NCCGCTCTTTTTTNNACCCACGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGCTTTACCCCACGGN
TTGGCTCATATTCAAAAGCCCTCAGATTTATGCTTTCAAACTCCATGTGG
ACTGTAGGACTCAAAGCTCCTCTTCACATGGTTCTAGAAGACATGCGCAG
CTCTGCCAGCTCTCCTTGTCCTGGATTCATGCTTGTGCTTGATCTAGCCA
CTCTTGCTGGCTTGGCAGTGTAAGCACGAGTGTGTTCGAATGGGCTTTTG
TATCTTATTCAGCGTTTTAAATATTTCTCAATCAACAGGTTTTGCAGGAT
TGCAATGTATTTTACCACAGCTGGTAGTAACATTTTTAAGTTGGTTTTCT
GTGTGGAAGGGTACATACATTAAAAGGCCCTATACATATGAAAATCATAA
GATGAGGCTTTTTTTTCTATGAACATATTCCGCCATATAGATGTCATACA
TACACACTGATGGAATGTGAAGGAAATGTTCATTTATGCATACAGCAGGT
GACATAATCAAGACGTGTGATGACAGACTCTGAACTGCTCTTGTGGGAAT
GCCCTATGAAAAAGAAATCCTGCTGACAGAGCAGAATCTCACTCAAACTT
CACAACCATATTGCCTTCTCGCCCGCAGGGTGCTCGCTGACACGACAGCA
ACCAGGTGACAGGATCACGGCTTTTAGAAGGGCACACTGTGTTTGGTCAT
ATGTCACTGCTGCCCATTAATTGGTAGTAAAAACTTAGTAGCAGTAACCT
GGAACCGTTGTGCCCAGGTGGGTCCTTTGTTGTAAGATTTGGCAGCACTT
AAAGACCATGGTATTTAAGTACCAAGTAAAACCCCATACTGACTAGTAAT
GGGCAAACTCAGCCTTAAGCCAACAGAATCCCAGTCCAAGAGAGAGAAAA
AAATTTCTTCTTGAAGATGATTGAAAGTAACTTAATGGAATAAAATCTCC
CAAAATTTTTTTTCTCCAGTTGAACATAAAAACCATGTCCTTTTTTATCC
AGGCCCAAAATTGAAAACCCAGTGTTGCCCAACCCCCGAATTTTTTTTGT
TAAAAAGGCTAAAAAAAAAATCTTTTAAACTAAAGGGGTTTCTTTCTCCA
AAACCACCTATTGTGGTTGCGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_g05.b1 MSMg01no323_g05.b1 CHROMAT_FILE:
MSMg01no323_g05.b1 PHD_FILE: MSMg01no323_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:52 2005
         (711 letters)



>mm_chr16_76927262_76928372
          Length = 1111

 Score = 1313 bits (679), Expect = 0.0
 Identities = 700/707 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    atttagctcctccaggcagagggaacctacatcccaaatcacaagagtcaacaggttcag 64
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1039 atttagctcctccaggcagagggaagctacatcccaaatcacaagagtcaacaggttcag 980

                                                                        
Query: 65   gggcagggtgagggggtgaggcattgctcaaaattccctagaaaacaagtctagtagcag 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  gggcagggtgagggggtgaggcattgctcaaaattccctagaaaacaagtctagtagcag 920

                                                                        
Query: 125  gagtgaggctaggctctgcttcttctgttaaacaccacagaaattgcttagtattttcga 184
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 919  gagtgaggctaggctctgcttcttctgttaaacaccacagaaattgctcagtattttcga 860

                                                                        
Query: 185  aggtctgatgggtctgttttcttttaatttaggagcaatagtaataataatagtaataat 244
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  aggtctgatgggtcagttttcttttaatttaggagcaatagtaataataatagtaataat 800

                                                                        
Query: 245  aataatagtaacaataataatgagtcggcatctttttcaaatactcaggtttcagctttc 304
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 799  aataatagtaacaataataatgagtcggcatctttttcaaatattcaggtttcagctttc 740

                                                                        
Query: 305  accaaaatgtctagagttttctctgctcaataactaacagtcttcattataatagtttta 364
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 739  accaaaatgtctagagttttctctgctcaataactaacagtctttattataatagtttta 680

                                                                        
Query: 365  tgaactatttttttcttgaattcttctgctcctatgcctactgttatatgaagtaacttc 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  tgaactatttttttcttgaattcttctgctcctatgcctactgttatatgaagtaacttc 620

                                                                        
Query: 425  aagccaaatctgatatcagattccttgagttagcaagctttttgtgctcagtgtggaagc 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619  aagccaaatctgatatcagattccttgagttagcaagctttttgtgctcagtgtggaagc 560

                                                                        
Query: 485  aagtgctggggaaaagctaattaaaatggcagagaccagactcttcctttaatgatgctt 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559  aagtgctggggaaaagctaattaaaatggcagagaccagactcttcctttaatgatgctt 500

                                                                        
Query: 545  tcttgtcaatcatttggtttatttcagttaatgtagggcgttcctttgtggtgcagccta 604
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 499  tcttgtcaatcatttggtttatttcagttaatgtagggcgtccctttgtggtgcagccta 440

                                                                        
Query: 605  ccttggagcctcccaccatgctgtctcagcacgcccattgctaggattacaggcccaggc 664
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 439  ccttggagcctcccaccatgctgtctcagcacgcccagtgctaggattacaggcccaggc 380

                                                           
Query: 665  caccacacccagctaaggattgttgaattgaaacagaatagtgttat 711
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379  caccacacccagctaaggattgttgaattgaaacagaatagtgttat 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no323_g05.g1 MSMg01no323_g05.g1 CHROMAT_FILE:
MSMg01no323_g05.g1 PHD_FILE: MSMg01no323_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:52 2005
         (720 letters)



>mm_chr16_76771853_76772972
          Length = 1120

 Score = 1315 bits (680), Expect = 0.0
 Identities = 710/720 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcaaactccatgtggactgtaggactcaaagctcctcttcacatggttctagaagaca 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcaaactctatgtggactgtaggactcaaagctcctcttcacatggttctagaagaca 260

                                                                       
Query: 61  tgcgcagctctgccagctctccttgtcctggattcatgcttgtgcttgatctagccactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcgcagctctgccagctctccttgtcctggattcatgcttgtgcttgatctagccactc 320

                                                                       
Query: 121 ttgctggcttggcagtgtaagcacgagtgtgttcgaatgggcttttgtatcttattcagc 180
           ||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctggctcgggagtgtaagcacgggtgtgttcgaatgggcttttgtatcttattcagc 380

                                                                       
Query: 181 gttttaaatatttctcaatcaacaggttttgcaggattgcaatgtattttaccacagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttaaatatttctcaatcaacaggttttgcaggattgcaatgtattttaccacagctg 440

                                                                       
Query: 241 gtagtaacatttttaagttggttttctgtgtggaagggtacatacattaaaaggccctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagtaacatttttaagttggttttctgtgtggaagggtacatacattaaaaggccctat 500

                                                                       
Query: 301 acatatgaaaatcataagatgaggcttttttttctatgaacatattccgccatatagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 acatatgaaaatcataagatgaggcttttttttctatgaacatattctgccatatagatg 560

                                                                       
Query: 361 tcatacatacacactgatggaatgtgaaggaaatgttcatttatgcatacagcaggtgac 420
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| 
Sbjct: 561 tcatacatacacactgatggaatgtgaaggaaatattcatttatgcatatagcaggtgat 620

                                                                       
Query: 421 ataatcaagacgtgtgatgacagactctgaactgctcttgtgggaatgccctatgaaaaa 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataatcaagacatgtgatgacagactctgaactgctcttgtgggaatgccctatgaaaaa 680

                                                                       
Query: 481 gaaatcctgctgacagagcagaatctcactcaaacttcacaaccatattgccttctcgcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaatcctgctgacagagcagaatctcactcaaacttcacaaccatattgccttctcgcc 740

                                                                       
Query: 541 cgcagggtgctcgctgacacgacagcaaccaggtgacaggatcacggcttttagaagggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgcagggtgctcgctgacacgacagcaaccaggtgacaggatcacggcttttagaagggc 800

                                                                       
Query: 601 acactgtgtttggtcatatgtcactgctgcccattaattggtagtaaaaacttagtagca 660
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 acactgtgtttggtcatatgtcactgttgcccattaattggtagtaaaaacttagtagca 860

                                                                       
Query: 661 gtaacctggaaccgttgtgcccaggtgggtcctttgttgtaagatttggcagcacttaaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtaacctggaaccgttgtgcccaggtgggtcctttgttgtaagatttggcagcacttaaa 920


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space:   788100
Effective search space used:   788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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