Query= MSMg01no324_d01.b1 MSMg01no324_d01.b1 CHROMAT_FILE:
MSMg01no324_d01.b1 PHD_FILE: MSMg01no324_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:26 2005
(249 letters)
>mm_chr16_43989742_43990390
Length = 649
Score = 478 bits (247), Expect = e-139
Identities = 247/247 (100%)
Strand = Plus / Plus
Query: 1 aaggccccatggttgtttcctgtacttcaagtctgtggagactctaatgggatgagaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccccatggttgtttcctgtacttcaagtctgtggagactctaatgggatgagaaga 260
Query: 61 aaataatatttctttagagacagactttagccagcagaggagaccagaggcgttcaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataatatttctttagagacagactttagccagcagaggagaccagaggcgttcaggga 320
Query: 121 ctgtggccactactactttagctatttcactgcaatgaaacgtgaggttgcattctgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtggccactactactttagctatttcactgcaatgaaacgtgaggttgcattctgtgg 380
Query: 181 agagccaaaagaattaaatgtcattactattatcaaataaaatttgttcttcttttaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagccaaaagaattaaatgtcattactattatcaaataaaatttgttcttcttttaaaa 440
Query: 241 acattgt 247
|||||||
Sbjct: 441 acattgt 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no324_d01.g1 MSMg01no324_d01.g1 CHROMAT_FILE:
MSMg01no324_d01.g1 PHD_FILE: MSMg01no324_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:26 2005
(529 letters)
>mm_chr16_44154025_44154954
Length = 930
Score = 1002 bits (518), Expect = 0.0
Identities = 527/530 (99%), Gaps = 2/530 (0%)
Strand = Plus / Minus
Query: 1 tctttaaataaccatctcctcattttgtaaag-aaaaaaaacttttaaaataataagaga 59
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 604 tctttaaataaccatctcctcattttgtaaagaaaaaaaaacttttaaaataataagaga 545
Query: 60 atctatatttttggctatgtgcaaagacaaacaacatcgattagcttttggaactgttta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atctatatttttggctatgtgcaaagacaaacaacatcgattagcttttggaactgttta 485
Query: 120 tagtcttcttttcctatcctcagctgtaaatacatctattttctctacctacaggtattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tagtcttcttttcctatcctcagctgtaaatacatctattttctctacctacaggtattt 425
Query: 180 gccttttctgaacaaaagaccatgaattcaaatgcttaaagcaaaaatatgcacacttat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gccttttctgaacaaaagaccatgaattcaaatgcttaaagcaaaaatatgcacacttat 365
Query: 240 aattcaggtaggtataaatctgagaatactttccacaagctcatagcctcttggctctag 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aattcaggtaggtagaaatctgagaatactttccacaagctcatagcctcttggctctag 305
Query: 300 gaaaaaatccttccttatctattttagcttgtgatagtacaggcatttcttggcctggga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaaaaaatccttccttatctattttagcttgtgatagtacaggcatttcttggcctggga 245
Query: 360 taatctaaactttataatcttctaatcacaggtttcctgctgcacctgttctctcaaaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taatctaaactttataatcttctaatcacaggtttcctgctgcacctgttctctcaaaca 185
Query: 420 gcagtcatatgatttaggatcaactctaatccaaatgacctcttcttaaaatttcatctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gcagtcatatgatttaggatcaactctaatccaaatgacctcttcttaaaatttcatctt 125
Query: 480 ccaagaccctatatctaaaataaggagacatgctgaaattctaagtaatg 529
|||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 124 ccaagaccctatatct-aaataaggagacatgctgaaattctaagtaatg 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
