BAC Information

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BAC

Clone NameMSMg01-324J19
Chromosome16 (Build37)
Map Location 77,546,672 - 77,547,148
singlet/doubletsinglet
Overlap gene2810055G20Rik
Upstream gene1700063K16Rik, LOC665120, Usp25
Downstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324J19.T7 (MSMg01no324_j19.b1)MSMg01-324J19.TJ (MSMg01no324_j19.g1)
ACCAG442718
length753763
length of high quality
(start - end)
---529 (76 - 604)
definitionCHROMAT_FILE: MSMg01no324_j19.b1 PHD_FILE: MSMg01no324_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:58 2005CHROMAT_FILE: MSMg01no324_j19.g1 PHD_FILE: MSMg01no324_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTTATTCCTGAGGTCATTAATG
TACAACTGTGTCTTCTACATGATTTCAATGTAAATAGTTCTACCTTTCAA
ACATAATCAGAATTATTCAAAGAACCTATAAATGCACAAACAGAACCATA
CTGACCATCCAAATATAAAATAATGGAATATATTTTGCTAAAGTTGTAGC
TTAAGAATCTATGTGAGAAAAGATGGGTCAGTTTTGGAGAAGAACTATAA
TATAATTTAGAGGAAGTAATTAATGTCTACACTTCCATGTATGGTGATAT
TCTTAGTTAACTTTTCTGTTCATACAATAATGCCTCGTGACCATTGCAAC
TTAGAAGAGAAAACTTTAGATTGAGCTTTTAGTTCCAGGCTGATAAAGTG
AAGGCACAGAGGCAGAAACAGTTGAGAGCTCACATCTCAAATCCCAAGCA
AGATGCAGCGGGCATATTGCTGAAGGGACCCTGATATAGCTGTATCATAC
AAGGCTATGCCAGTGCCTGGCAAATACAGAAGTAGATGCTCACAGTCATC
TATAGGATGGTACACAGGGCCCCCAATGAATAAGCTAGAGAAAGTAACCA
AGGAGCTGAAGGGGTCTGCCACCCTATAGGTGGAACTACCATATGAACTA
AACCGTACTCCCGGAGCTCCTGTTTCTAACTGCATGTGGATAAAAAAAGT
TCTATCCTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_j19.g1 MSMg01no324_j19.g1 CHROMAT_FILE:
MSMg01no324_j19.g1 PHD_FILE: MSMg01no324_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:58 2005
         (529 letters)



>mm_chr16_77546672_77547600
          Length = 929

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttattcctgaggtcattaatgtacaactgtgtcttctacatgatttcaatgtaaat 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcatttatgcctgaggtcattaatgtacaactgtgtcttctacatgatttcaatgtaaat 418

                                                                       
Query: 61  agttctacctttcaaacataatcagaattattcaaagaacctataaatgcacaaacagaa 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 417 agttctacctttcaaacataatcagaattatttaaagaacctataaatgcacaaacagaa 358

                                                                       
Query: 121 ccatactgaccatccaaatataaaataatggaatatattttgctaaagttgtagcttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccatactgaccatccaaatataaaataatggaatatattttgctaaagttgtagcttaag 298

                                                                       
Query: 181 aatctatgtgagaaaagatgggtcagttttggagaagaactataatataatttagaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aatctatgtgagaaaagatgggtcagttttggagaagaactataatataatttagaggaa 238

                                                                       
Query: 241 gtaattaatgtctacacttccatgtatggtgatattcttagttaacttttctgttcatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtaattaatgtctacacttccatgtatggtgatattcttagttaacttttctgttcatac 178

                                                                       
Query: 301 aataatgcctcgtgaccattgcaacttagaagagaaaactttagattgagcttttagttc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 177 aataatgcctcgtgaccattgcaacttagaagagaaaactttagattgagctttcagttc 118

                                                                       
Query: 361 caggctgataaagtgaaggcacagaggcagaaacagttgagagctcacatctcaaatccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 caggctgataaagtgaaggcacagaggcagaaacagttgagagctcacatctcaaatccc 58

                                                                    
Query: 421 aagcaagatgcagcgggcatattgctgaagggaccctgatatagctgtatcatacaa 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  aagcaagatgcagcgggcatattgctgaagggaccctgatatagctgtatcatacaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)