BAC Information

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BAC

Clone NameMSMg01-327G16
Chromosome16 (Build37)
Map Location 63,116,718 - 63,117,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327G16.T7 (MSMg01no327_g16.b1)MSMg01-327G16.TJ (MSMg01no327_g16.g1)
ACCAG444780AG444781
length7581,856
length of high quality
(start - end)
380 (37 - 416)---
definitionCHROMAT_FILE: MSMg01no327_g16.b1 PHD_FILE: MSMg01no327_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:19 2005CHROMAT_FILE: MSMg01no327_g16.g1 PHD_FILE: MSMg01no327_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAA
TCATCAAACTACAGGATGCCAGCGTAAAGATTTCACACACACTGTATAAT
TCTCTTAAGTGTTGAAAAAGTCACACCCCAGTAATAACAGACATGGTGTG
TGCCAGAGGCCAGGATTGAAGAAGAAAGATTACCACAAAAGAATGCCTCA
ACTTTTAGAAGTGATCAAAATATTCTGCTATCAAGTTGGTGTTAGTTATT
CAAATCTCATTAATTTCTAAGCTTAAAGTGAACACGTTTTATGCTAGATA
CTCTGCAGCTCATTGAAACTGATTTTTAATAAATTAACATGTGGATGCAT
ATTAGTATTGATCTAAATTTATTGGAGAATAGTATTTATTTAATGTCCAA
CTCAAGCTACCACAATGTCCCCCCCACCCGNCTTTCACTCTAGTCGATGG
CCAGTCAAAGGGCTACTGCTTAAAGAGCCTTGAATAAACTCTATCACCAT
GAACTTGGGATGAGGGAGTGCGTTACAGCTCTCGTGTTTGGACTGTATGG
AACAGAGCTGGCAAATGCACTATTGCTGTACGATACAGCATCCCCGGCTG
AGTTTATTTCCCCATTCCTATTTCCTTCTATGTCCATCTGCCTTGAAAAA
CTGACCATTAGCAGCACCAGCTGTTCTGGTTGTCTCCCACACTGCCAGCC
TTGTTTCCTGAATATTCATCCTTTCTTCTCTCTGCCATCCCGTTTATTGT
ATACTTCA
CACGCAACAAGATTGATATAAGACGCAGGCGACGATCATGCGCCGGGCTG
CTGTGTTGTCTCTCATATTAGTTATGTAGTTACGCGCTCCCACGCATTTG
TCNCAGTTAGTATGTATCATTTTCCTCTCGTTTGTATTAAACACACCAGT
TGCGATGCGCCTCGTCAGTTGTATATAACTCGCAAGATCAGCGGTATNTA
GTCACGGCGATCTTTGTCTCNCGGACGACGTAGCGCCGATACGTAATATA
TACGGTCTCTGTTCGGTATGACATATGGTAGGGACCCGCCGCTGCGTTAT
CACATCTATATCTCAGTGCACACTCTAACCGCTTGGCTCGGTAGCTACAC
GCGCTGTGTGCCGACCACGATCATGGAATGAGTATATACATATACCTTGT
TGCTGGATGGAGCACCGCTTATATTGAGTCACGCGCACAAGTACATGAGT
CTCCGTCATACTGCTTGAGACTATGTACGTATCCTGTCGCGATATATATA
GTGTACGCCACGATGTCAAACGTGTTGTGTCGCGGTCCTATGTCGACACG
CTGTGTGCGCGCGTCTTCTAATATATGTCGTACGGCATGACCGAGCGATC
AACGCAGGGCGCTGTCTAAGATCCAGATTACGGCGCGCAGGTATGAGGCG
CGTGCACACACAGCAGCTATGTAGAGTTAGACGATGATCGGGAGTGAATC
GGCGCAACGTGATGGGTCACGTCGACGCGTAGTCGCCCGCGATCTAGTAG
GGTAGACGCTGAGTGTCTTGACGATATCGACCTGCAAGTGACGATGTGAC
GCGCACGACGCATTTATGATGTGTGAGACNATAATATATCTGCCGCACAA
TTATAGCGGAGTCACGTATCATATTATACGCGCTGTACGGTGTCTCGACG
CTGCATCGCCGCAGCTGTGGGTCGCTATGTGCGAGTGTGAACCGTGGGAC
GNCACACCCGACTGATCGACAGACGTATGTTGATGTGTGAGCATTATGAG
TCGATGTAATGAGCTGGAATGCACGGATGACGAGCTCATGTGTGCTCCAC
ACTTCTGATATTGTCCNGTGCGCGCGCCTGGATGTGTCTTATTCGCGTTG
AGTCGCGCGCGCTGCCGGCTCATCTATTACGACGCTCGCGCCTGTTGCGA
TATACCTACTATATTGCAGTACGCGCGCGATATCGCCGCTTCTCGAGTAT
CGCACGCTGCCNATGAGAGAGNCGATTTNGTAATATATGACCGACGGCTC
GATCGTCTCATACATTGTTCACAGTGCGCTNTTTAATTGTTCAGTGCCCA
CTATATAATGTCGTGTGTAGACCCCTCGCGCGCACTTTGTTGTGGTTCTC
CGCTANTGATATACTCTCCTGTCCGATNTGTATGTCTATGCGACAGTCTC
GCGTGATATCGTGAGTGCNTGTATTGATATGCGAGCACAGTCACGCGTGT
GCCGACGNNTANATTGTAATGCGCGCCGCCGACGCTATATATCTTCGGTA
CTACGCACGCGANCGCNCTCGCGCCGATCTGTTTATATNTACGCGCTATT
ATATAGCCCGCGCGTAGTACTACAGCGCGTGAGTCAGTGATACATTGTAT
TGGTTATCGCTCGTGTGCTTGCATATAAGTAAGTCTGATNGCTGCTACTA
TNGATGAGAGAGCAGACGGTNCGNAAAAAGGATAGCAGATATATTTGTGA
TCTATACGNCGGCGACGACATGCTCGTAGTCTNTATNCATCAGCGCGNCG
ATAGCGTGATCGCAGNTACAGCGCATGTCATGGTGTATAATCTGANCAGT
CGTATNCGTCGACGCCTAGTGTGTTAACANTACTCGTACATGTACGTCAG
CTCANN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_g16.b1 MSMg01no327_g16.b1 CHROMAT_FILE:
MSMg01no327_g16.b1 PHD_FILE: MSMg01no327_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:19 2005
         (380 letters)



>mm_chr16_63116514_63117293
          Length = 780

 Score =  688 bits (356), Expect = 0.0
 Identities = 368/372 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaatcatcaaactacaggatgccagcgtaaagatttcacacacactgtataat 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaattcaaaatcatcaaactaaaggatgccagcgtaaagatttcacacacactgtataat 517

                                                                       
Query: 65  tctcttaagtgttgaaaaagtcacaccccagtaataacagacatggtgtgtgccagaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tctcttaagtgttgaaaaagtcacaccccagtaataacagacatggtgtgtgccagaggc 457

                                                                       
Query: 125 caggattgaagaagaaagattaccacaaaagaatgcctcaacttttagaagtgatcaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caggattgaagaagaaagattaccacaaaagaatgcctcaacttttagaagtgatcaaaa 397

                                                                       
Query: 185 tattctgctatcaagttggtgttagttattcaaatctcattaatttctaagcttaaagtg 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 396 tattctgctatcaagttggtgttagttgttcaaatctcattaatttctaagcttaaagtg 337

                                                                       
Query: 245 aacacgttttatgctagatactctgcagctcattgaaactgatttttaataaattaacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aacacgttttatgctagatactctgcagctcattgaaactgatttttaataaattaacat 277

                                                                       
Query: 305 gtggatgcatattagtattgatctaaatttattggagaatagtatttatttaatgtccaa 364
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtggacacatattagtattgatctaaatttattggagaatagtatttatttaatgtccaa 217

                       
Query: 365 ctcaagctacca 376
           ||||||||||||
Sbjct: 216 ctcaagctacca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)