BAC Information

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BAC

Clone NameMSMg01-327O17
Chromosome16 (Build37)
Map Location 86,713,166 - 86,713,503
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts1, Adamts5, LOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327O17.T7 (MSMg01no327_o17.b1)MSMg01-327O17.TJ (MSMg01no327_o17.g1)
ACCAG445152AG445153
length743743
length of high quality
(start - end)		369 (48 - 416)338 (78 - 415)
definitionCHROMAT_FILE: MSMg01no327_o17.b1 PHD_FILE: MSMg01no327_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:54 2005CHROMAT_FILE: MSMg01no327_o17.g1 PHD_FILE: MSMg01no327_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGTGTCGCCTTAGCTGTCCTGAAGCTCACTCTGTAGACCAG
GTTAACTTTGAACTCAAAGATCCACCTGACTCTGCCTCTCAAGTGTTAGA
ATTAAAGGTGTGCACCACCACCTAACAGCTGCTGTTTAATTCATAAATGC
ATAGAAACATAAATCGTGGGAGTTTGTTCTCTTCCTCCACCATGTGGGTC
CTGTGGAATAAAGTCAAGTTTGTAAGTTAGTGAAGTTAGTGGTGAGAGCC
TTTACTTGCTGAGTCATCCCTCCAGCCTCACAGCCTAAAATGGTTGAATA
AATAAAAAATAGTTCTCAAGACTGAGCTATTTCTAAAGATTACCTAGCAG
TTAGGTTTAAGAAAAACTCCACCAAACAATGTATGTGAAACATCAGTGTT
GTATACTTCTTAAGGATTGACTCTTCATCTAGCCTTTAACATTACCATTC
TAGAATATATATATATATATATATATATATATATATATATATATATATAT
ATATCAGCTATCTAACCATCCACATTTTTTTTTCATACATATACATTCTT
ACCTTCAGTTCACGCCTATTGCTCTTTCCGGGATATCATATTTTTGACTT
TTATTACCTGATTTCTCTCCTTTCTTCCCTACGTTCACCTTTCTTCCTCT
TCCTTCCAACATATCCTTGTTGTATTATCGCCATGCCCTTACT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATTTGGTTTACTTATCCTTA
AATCGATATTTCTCAATGTTATTTATACAAGAACAAGTTTTGCACACACA
ACACAGACATACTTCATGACTCTCTTGATCACATTTTCTGGCCTCTTAAA
ACACACAGATATTGCATGTCATAAGCTTTCTACACACACGAAAACATGAT
TTATATCTGCAAAAATATTTTTTCAGTTCCTGTTTAGCTACAGCAGAAAT
TCTCAGTAGGGTCTGAAGAGCTGCCACACAGCAGCTTTTACTAGGGAGAA
TTACATGTAGAAAGGCTTGGCAGCCATGATATCCTCAGGAATGGAGAACA
TAGTTGTGATTAGTAACACCCACGCAAGTCACTCATCATAACACTGGAAC
TCAGGCTAGATAACAAAGCTACTCTTGACCATTCTTAAGATTTTCAAAAT
CCAGGATTGCAATATAGAATTGAATTTTTGGGTTATAACTCAAAGGTTGG
GTACGTTTCCTGTACCTCTGGAGACAGACAACTCTTGCTTTCACAGCTCT
GAGAGGTACTGATTTTAATTTACCAGACATTCTCACTAATATCCACCAAC
ACTTGTTTATACACCAGGAACTGCATAATTATTATTTGTGAGAAATCTCG
TGAAAAAACTTGTCTGCTAGAACATTCTATAATGTATTCTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_o17.g1 MSMg01no327_o17.g1 CHROMAT_FILE:
MSMg01no327_o17.g1 PHD_FILE: MSMg01no327_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:55 2005
         (338 letters)



>mm_chr16_86712966_86713703
          Length = 738

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%), Gaps = 2/339 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatttggtttacttatccttaaatcgatatttctcaatgttatttatacaagaacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tccatttggtttacttatccttaaatcgatatttctcaatgttatttatacaagaacaag 479

                                                                       
Query: 61  ttttgcacacacaacacagacatacttcatgactctcttgatcacattttctggcctctt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttttgcgcacacaacacagacatacttcatgactctcttgatcacattttctggcctctt 419

                                                                       
Query: 121 aaaacacacagatattgcatgtcataagctttctacacacac-gaaaacatgatttatat 179
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 418 aaaacacacagatattgcatgtcataagctttctacacacacag-aaacatgatttatat 360

                                                                       
Query: 180 ctgcaaaaatattttttcagttcctgtttagctacagcagaaattctcagtagggtctga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgcaaaaatattttttcagttcctgtttagctacagcagaaattctcagtagggtctga 300

                                                                       
Query: 240 agagctgccacacagcagcttttactagggagaattacatgtagaaaggcttggcagcca 299
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 299 agagccgccacacagcagcttttaccagggagaattacatgtagaaaggcttggcagcca 240

                                                  
Query: 300 tgatatcctcaggaatggagaacatagttgtgattagta 338
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgatatcctcaggaatggagaacatagttgtgattagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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