BAC Information

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BAC

Clone NameMSMg01-327P20
Chromosome16 (Build37)
Map Location 30,694,423 - 30,884,444
singlet/doubletdoublet
Overlap geneLOC100043122
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623
Downstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327P20.T7 (MSMg01no327_p20.b1)MSMg01-327P20.TJ (MSMg01no327_p20.g1)
ACCAG445202AG445203
length746872
length of high quality
(start - end)		371 (50 - 420)218 (78 - 295)
definitionCHROMAT_FILE: MSMg01no327_p20.b1 PHD_FILE: MSMg01no327_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:59 2005CHROMAT_FILE: MSMg01no327_p20.g1 PHD_FILE: MSMg01no327_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,884,076 - 30,884,444)(30,694,423 - 30,694,638)
sequence
TTAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCG
CGGAATTCCACCTTTCATGCCCCCAAACGGCCTCCAGACGAGACAAACAG
CTCACTGCAGAAGAATTCAGAGCCTTTCCACCAGGAAGTAGTAAGACTGA
AAATTAATTATTCCCACTCTGCCAAATTATCCAGGAGGGAAATTACAAAG
TCCTAGTAATTAACCACGAGAAGGAGTTCACAGTAAACACTGAGTCAGTC
TCTCCAAGATCTCTCTTAAATTGGAAGCGATTGATTCCAAGCAGTTCGGC
TTCCCTGGTGTCTCCAGCGCAACAAAATGTAAAGAGTCCTCATACAGGGC
TCAGACAGTCATACCCATGCACACCCCAGAGGCATACACAAACAGTCCGC
ACGGTTTCACATGCCTGAACCCTCCCCTTTGGTTCCTCAAATGTGTCTCG
AAACAAGCTCTATCTAATAGCAGGTGCCGGACACGGGCTCAGCAGACACC
CGTGTAAAACTCCGAAGGCCAAGCACTATGCTCTGCAAGATGAACCAGAA
TCCCTCTGAAAAAGAAGCCCCACCTTTGCCCCAAGAGGATTAACTGGATT
TACATCCTCTGCCATTTTAATTATTGCGAGGCACAGTCGGCAGATGGAAG
GCTGGGGCTGGAGTGTCATGAATGCAGAATTTCAAATATGTCAACAAGCC
TTCATGGACACTGCGATCAGAGTGCTTTGGTTAAATAAACAGGTGC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCATGCATTACCACACCTAG
CTTAAGTGATGTCTGGAGTCAAATTCTGGGCTTTCTGCATACTAGAGAAG
AACTCTATTAGCTCAGCTTATATCCCCAGCCTCAGGTCTTGTCTTGAAGA
ACAAGAACACAGTCAATTTAAGAAGAAGTTTTCTTCCAAAGGTGAAACAA
AACAAAGCAAAGTAGAGAGAGGGAGGGAGAGGGGGAGGGGAGGNNNNNNN
NNNNNNNNNNNNNNANNNNNNNNNNTTTTTTTTTTTTTGTNTATTTTTTT
TTTTTTTTTTGTTNTTTTTTTTGTTTTTCCCCCCCCCCCCTTTTCTTGGA
ATCNNNCCNTTTTTNTTTTTANTTTTNTTTTGGTGCCCCCCCCCTGGGTT
AATATATTAAGTAATTCATCTTGTGTTATATTCAATCACACCTTTCTGAT
TTTTCTTATTTCTTTCATATGAATCAACGCGCTGTTTGTTGTGAGTGTAT
TTTCTTCATTTGTTTGTTTTACGTGTTTAATTCATATTTTTATTATGCTT
TCGGTAGCTTCTTGTTTCTATTTGACTGTTCGACTGTTCTAAGATATTGC
GTTTGTCCCTTTTTTGTCTGTTCCTCTTTTTTTCCGTTGTTGTCTAGATA
CTAGATCAACACTACGACACGCTTCCGTGTTGCTCGCTTCATCTGTTGCA
CGTATACGTATCTTGTTATTTGTTATGTCCTTCTCTCTTAATCGTTCTTA
TTTCTTAGCTAAAGTATCTTTGTCGATATCCGTTATGCTAGTTGTATCAT
TACTTATCCGTTCGTCCTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_p20.b1 MSMg01no327_p20.b1 CHROMAT_FILE:
MSMg01no327_p20.b1 PHD_FILE: MSMg01no327_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:59 2005
         (371 letters)



>mm_chr16_30883874_30884644
          Length = 771

 Score =  675 bits (349), Expect = 0.0
 Identities = 364/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccacctttcatgcccccaaacggcctccagacgagacaaacagctcactgcaga 62
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggaattccacctttcatggccccaaacggcctccagacgagacaaacagctcactgcaga 512

                                                                       
Query: 63  agaattcagagcctttccaccaggaagtagtaagactgaaaattaattattcccactctg 122
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agaattcagagcccttccaccaggaagtagtaagactgaaaattaattattcccactctg 452

                                                                       
Query: 123 ccaaattatccaggagggaaattacaaagtcctagtaattaaccacgagaaggagttcac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ccaaattatccaggagggaaattacaaagtcctagtaattaaccacgagaaggagttcac 392

                                                                       
Query: 183 agtaaacactgagtcagtctctccaagatctctcttaaattggaagcgattgattccaag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 391 agtaaacactgagtcagtctctccaagatctctcttaaattggaagcgattgattccgag 332

                                                                       
Query: 243 cagttcggcttccctggtgtctccagcgcaacaaaatgtaaagagtcctcatacagggct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cagttcggcttccctggtgtctccagcgcaacaaaatgtaaagagtcctcatacagggct 272

                                                                       
Query: 303 cagacagtcatacccatgcacaccccagaggcatacacaaacagtccgcacggtttcaca 362
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 271 cagacagtcatacccatgcacaccccagaggaatacacaaacagtctgcacggtttcaca 212

                    
Query: 363 tgcctgaac 371
           |||||||||
Sbjct: 211 tgcctgaac 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no327_p20.g1 MSMg01no327_p20.g1 CHROMAT_FILE:
MSMg01no327_p20.g1 PHD_FILE: MSMg01no327_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:00 2005
         (218 letters)



>mm_chr16_30694223_30694840
          Length = 618

 Score =  402 bits (208), Expect = e-117
 Identities = 214/216 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcatgcattaccacacctagcttaagtgatgtctggagtcaaattctgggctttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcatgcattaccacacctagcttaagtgatgtctggagtcaaattctgggctttctg 260

                                                                       
Query: 61  catactagagaagaactctattagctcagcttatatccccagcctcaggtcttgtcttga 120
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 261 catactagagaagaactctattagctcagtttacatccccagcctcaggtcttgtcttga 320

                                                                       
Query: 121 agaacaagaacacagtcaatttaagaagaagttttcttccaaaggtgaaacaaaacaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacaagaacacagtcaatttaagaagaagttttcttccaaaggtgaaacaaaacaaag 380

                                               
Query: 181 caaagtagagagagggagggagagggggaggggagg 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagtagagagagggagggagagggggaggggagg 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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