BAC Information

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BAC

Clone NameMSMg01-328J01
Chromosome16 (Build37)
Map Location 19,041,823 - 19,041,999
singlet/doubletsinglet
Overlap geneIgl
Upstream geneDgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira
Downstream geneIgl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328J01.T7 (MSMg01no328_j01.b1)MSMg01-328J01.TJ (MSMg01no328_j01.g1)
ACCAG445629AG445630
length726708
length of high quality
(start - end)
---177 (78 - 254)
definitionCHROMAT_FILE: MSMg01no328_j01.b1 PHD_FILE: MSMg01no328_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:45 2005CHROMAT_FILE: MSMg01no328_j01.g1 PHD_FILE: MSMg01no328_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:45 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCTTCAAATTTTGCGGCCGTTAAACAATTATATTTTCAAAAGAATCCGCG
GAATTCTCACAATCTCTACATATTTGTATGCTTGATCATTAATACTATGA
GGATGTCTGTGCTTATGAGTGACATAGATGAAAGTCTGGTTTCTTCTGTT
GCCTTCTCCCTTTTATGAACAGTGATTCTTACTGAAACCGGAATTCTTTG
ACTGGNCAGTGAGACCTCAGGATACTGCCTGTCTATAGAAACCCAAGTGC
TGGGATTACTGCTGTGGTGTTACTCTTGAATTTTTGTGAAGGTGCCAGAG
ATGGAATTCACGTAAGTGTTATATTCCCTGACCCCCAACATGTATTTCAT
TAGTTGTCCATGATGGACCATGACTGTCAACCCAGAACCCTAGAGGCACA
ATTTTGAGTGCAGTTGGTCCTATAGATTGATATCACTTTCCATATATCAC
ATACATACTCTCTTTTTGTACATTTTATAATTTTAATCCTATTAGTGTTT
GAACAAATCATTTTTCTGCTTCTGAGTAGATTCTTGGTTACTACGCTGAG
AAGAAACTCCTGGCTCGACCATTGGAATCTGACCACTCGATCCTACGTGG
AGGGTCCTGCATTAACTGCCCTCAATCTTGTCGTCTTGTTGACTTTTCCT
CACATGGTACCTTGCATTTGTCTTTATATGAACCCCAACTTGGTTTACTC
CAAATTTTTATTGTTGATCTTTTATC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTCATCAGCTCAAGGATCC
AAATGGATAGTTCTGGAAGCAGGGAGGTGTTTTCTAGAGTTCAGCACTCT
CTGTCTGGAAAGAGGATGAAATTTATACAGAAATCACTCTGCCCCTTTTG
GAACATAGCCTGTGATGATTCATTTTCATTGACAGCNTGATCAGATTTGG
AATCACCATAGAAACACACCTCTGGGTGTATTTGTGAGGACCAGGCAGGT
CTAACTGAGCAGAGGAGAATCACCTTGAATATTTGGAACCATCCCATCAG
GTGGACTCGCACTGAATGAACAGGAAAGTGGAGAAAGGGAAGTGGGCACC
AATGTTCATCTCTCTCTGCTTCCTAGCTGCCAATGTGCTGTATCCAGACG
CTGCACACTCTGCCACGTCACTGTCTTCAACAGGGAGGGCTGTCTCCACT
CCAACCTGCAGCCTAAGCAAGGCCTCCCCTCTTAAAGTTGCCCTTTGTCA
GGCAGATTGTCAGAGTGATGAGAACTTTCACTGATGCAGAGACCACATAG
AAAAACCTTGTCAATGATCATGTTCCAGGAGGTGAGTTTCCGTGAATTTC
TTTGCCCCGTGAGTGCTCCCAGGTCTCTCGGCCTGTCAAGAAAACTTCTC
TAGAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_j01.g1 MSMg01no328_j01.g1 CHROMAT_FILE:
MSMg01no328_j01.g1 PHD_FILE: MSMg01no328_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:45 2005
         (177 letters)



>mm_chr16_19041623_19042199
          Length = 577

 Score =  329 bits (170), Expect = 7e-95
 Identities = 175/177 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggtcatcagctcaaggatccaaatggatagttctggaagcagggaggtgttttctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cagggtcatcagctcaaggatccaaatggatagttctggaagcagggaggtgttttctag 318

                                                                       
Query: 61  agttcagcactctctgtctggaaagaggatgaaatttatacagaaatcactctgcccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agttcagcactctctgtctggaaagaggatgaaatttatacagaaatcactctgcccctt 258

                                                                    
Query: 121 ttggaacatagcctgtgatgattcattttcattgacagcntgatcagatttggaatc 177
           ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 257 ttggaacatagcctgtgatgattgattttcattgacagcttgatcagatttggaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)