BAC Information

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BAC

Clone NameMSMg01-328O10
Chromosome16 (Build37)
Map Location 5,016,198 - 5,016,513
singlet/doubletsinglet
Overlap gene3930401K13Rik
Upstream geneDnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi
Downstream geneUbn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436, A2bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328O10.T7 (MSMg01no328_o10.b1)MSMg01-328O10.TJ (MSMg01no328_o10.g1)
ACCAG445875AG445876
length737894
length of high quality
(start - end)
374 (41 - 414)---
definitionCHROMAT_FILE: MSMg01no328_o10.b1 PHD_FILE: MSMg01no328_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:11 2005CHROMAT_FILE: MSMg01no328_o10.g1 PHD_FILE: MSMg01no328_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATT
CCAGGAGTGCCGGGGCTACATAGTGGGAAGATAAAAGGAAGAACAAACAA
ACATGAGATCCTTGTAGGCTGTAAGGAAAGCCCTGTCTCAACAATAAAAC
CCAAACACTGGGGCTGATGGATCAGGACTTAAGAGAACCAGCTGCTTTTC
CAGAGGGCCGGGATTCAAATTCCAGCACCCATATGGCAGATCATATACAT
CTGTAACTCTAGTTCCAGGAGATCCAAACCCCTCTGAGAGCATCAGGCAC
CCACATAGTGCACAGACTTACATGCAGGCAAACAGACACATGAAATAATA
AAATAAATTTTATAACTGAATAAAACAAAAGTAATAAAATAATGTATGTA
GGCTCTAAGGTAACCCCCCCACACATAGCTGGTATATCAATGGGCACAGC
TGCTGTGTTGATGAGCACAAAGGAACCTTTGGAAAGGTTGGTTGGGAGGT
ATCAGCCATTTTTTAAGAAAGGGCACAGCGATCCTGAGTATAATACAACA
TCCTCGGAAGACTGCATTGAGGGCTGTCACCTTGACTCCTAACAGCACTG
AGCACTTCACATGTCTGCGTATAAATAGAGCCATGAGGGTTGTGACTGTT
CCTTCTTCTGGAGTAGCTGCGGCACAATCCCACAGGCTAGGACATCTGCT
CCACATCAAGTCAGTATTCATACCCACATACCTCAAG
AATAAATAAAAAAATAAATAAAAAAAGCAAAGGAAGGGGGGGGGGGGGGG
AGGGGGGGGGAGGGGCTAGGGCGGAGAAGATAGGGCGACGGGGAGGGCAG
GGGGGGGTGATATATTTNNCGGGGGAAAAGGGACAAAAGTTGGGGGGTNA
GGGGCCCCCGGGAGGAAGGGGGACGGGGCCCCGTGGGTGCTTCTCTACAC
NNAAAGNGAAGGAGGGGGGGGNNNNNGGAAAAAAANNNNAAAAAAAAGGG
GAGAGGGGGGTGTTACCCCGCGGGGGGGGGAGAAAAAAAAGCGATCTCCC
CCTAACGGAGGGAGGGGGGGGGAGAAAAAAAATAATAAAAGAGGGGGGGC
CCCGGGGGAGGGGAGGGGGTATAACTTAGAGAGAAAAAGAAAAAAAAGTG
GGGGGGGGGGGGGGGGGTGGCGCCGGGGGGGGGGAAAAAGAAGGAGAGAG
GAAGCAACAGGGGAGAAAGAACAGAAGATGGGGTGGCAGGGGGGAGTGGG
CGGGGGGCGGGGGGCGGAATGTAATAAATAGGAGGGAGAGGGGGAGGGGG
GATGANCGAAAGGCGCGGGTGGGGCGGCGCGGAGCAAGACAGAAAATATA
ATAGAGAAAGAAAGGGAAGAGCGGAAGGGAATGGTGGGAAGGGGGGCGGG
TGTGGTGAGGCGAGAAGGTCTAATCGCGGAGAGAAGTAGGAGGAGTAGCG
TTCCGTGGGGCGGGGGGGGGAGNAGAGGGAAAAGCGCGGCAGAGTAGAGA
AGAGTGGCGTGGGGGGGGAGGGGAAGGGGAGATATAACATAAGGAGAGGA
GGTGGGTTGAGGGGGAGAGTGAAGGTGGGGGGAGGGGAGAGAGGAGGGAG
AAGAGAGGGGGAGGGGGAGAAGAAGTAAAAAGAAGAGGGGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_o10.b1 MSMg01no328_o10.b1 CHROMAT_FILE:
MSMg01no328_o10.b1 PHD_FILE: MSMg01no328_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:11 2005
         (374 letters)



>mm_chr16_5016198_5016971
          Length = 774

 Score =  565 bits (292), Expect = e-165
 Identities = 310/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccaggagtgccggggctacatagtgggaagataaaaggaagaacaaacaaacatg 65
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaattccaggagagctggggctacatagtgggaagataaaaggaagaacaaacaaacatg 257

                                                                       
Query: 66  agatccttgtaggctgtaaggaaagccctgtctcaacaataaaacccaaacactggggct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 256 agatccttgtaggctgtaaggaaagccctgtctcaacaataaaacccaaaccctggggct 197

                                                                       
Query: 126 gatggatcaggacttaagagaaccagctgcttttccagagggccgggattcaaattccag 185
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 196 gatggatcaggacttaagagaaccagctgcttttccagagggccggggttcaaattccag 137

                                                                       
Query: 186 cacccatatggcagatcatatacatctgtaactctagttccaggagatccaaacccctct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cacccatatggcagatcatatacatctgtaactctagttccaggagatccaaacccctct 77

                                                                       
Query: 246 gagagcatcaggcacccacatagtgcacagacttacatgcaggcaaacagacacatgaaa 305
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 76  gagagcaccaggcacccacatagtgcacagacatacatgcaggcaaacagacacatgaaa 17

                           
Query: 306 taataaaataaatttt 321
           ||||||||||||||||
Sbjct: 16  taataaaataaatttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)