BAC Information

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BAC

Clone NameMSMg01-329I06
Chromosome16 (Build37)
Map Location 92,420,088 - 92,420,516
singlet/doubletsinglet
Overlap geneDscr1
Upstream geneIl10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1
Downstream gene2410124H12Rik, Clic6, Runx1, EG666023, LOC100040747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329I06.T7 (MSMg01no329_i06.b1)MSMg01-329I06.TJ (MSMg01no329_i06.g1)
ACCAG446330AG446331
length763729
length of high quality
(start - end)
314 (46 - 359)429 (75 - 503)
definitionCHROMAT_FILE: MSMg01no329_i06.b1 PHD_FILE: MSMg01no329_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:00 2005CHROMAT_FILE: MSMg01no329_i06.g1 PHD_FILE: MSMg01no329_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACCAAGTGTCAGCTCCATGGGGGCAGAGACTGTGTCATATTCAT
TTGAACATCAAGATAGAATTATAGAGTCATCGTTTCTACAGTTTTTTTTT
AGAGCAATCAAAGACATGCCAATGTGTTGTTTGGTTTTTGCTTGTTGGTT
TTCGTCTACTTGACACAAGCCAGGATCACGTGGGAAGAGATAGCTTCAGT
TGAGAAAGGACTCTATCAGGCTGGCCTGTAGGCGAGTCTGTGGGGCATTT
CCCTGATTAACGATGCCGTGGAAAGGTCCAGCCTTCTGTGGGTGGTGCCG
GCTCTGAGCGGTTTGTCCTACGCTGTACCAGAAAGGTTGCTGACTCATTT
ATGGTTAAGGATATGTGCCCCCCCCCGCCTCTTTATTTCACTCCCTTCCC
CACCTGTCTGTCTTGTCTTCCCTGCCACATTTTTCACCCTGCTCCTGGCA
TTTGTTGTTTCTCCTTTCCACCATACCTCCAACTATTTTTTTTTTCCCTC
CCTCCCCCCCCTTTTTTTTTCCACTCCTGTATTTCTTTTTCTCCCCCTTA
TTGTTCCCTTTTCCCTCCTTTTTCTCCTATCTTCTCCTTTTTCCCCCTAC
CTTCCCCCCTCCTCCCCCTTTTTTTTTTTTCTTTTCCCCTCCTTCTTTTC
CTTTATCCTATTTACACCTATTCCATTCCCACCCCTCATATCTTCTGTTG
TACCTCGTCCTAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGGAGTAGGGAATGGTGAAGAGTT
CTCATGGTCTCTCCAGTTCTCTCAGCTTCACACCGTGCCGTCCGTTTGTT
CAATGAGCACCAGCCATGGTGGGGGCTCTGACTGGGCCAATTCCTCTTTG
AACTGATGGCTTCACAGGGCACATGTGTCCACCCAAAGAGACTGTCAGGA
CACTGGGCATAGACACTCCACCCAATGTTCCTGCTGGCACTGGTGGCTTT
AAAGTAGTCCCAGAGGGTTAAGGCAGAGAGCCCCCACTGCCCCCACCCCA
GTCCTGGCTTTAAGGTGTCTGAGATTGAAAGCAGAGCCTCCCACAGACTA
GGCAAGAGCTCTACCCCCGCCCTATATCTCTAGCCCCCTTTTACTCTGTA
TTCTGAGACAAGGTCTCACTAAGTTGCCCACTGGCTGGTCTTGAATTCAT
TCTGCAACCCAGGCAGGCTTTACAAGTGTGATCCTCCTGCTTCATCCTAC
CGAGCAGCTGACATTACAGGCTCGTGTCATTGTCCTACCTATGACCTACT
CTTGTAAGTGACAAAGGTCCATTCAGCTATTCCTTATGCAGTGTTCCTAT
GCAGTCCAGCCTGTAACGTGGTATCCACAATTTCGGCTCTCATTCCACGG
CATACCTAATTTTAGCCTGCTGCTTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_i06.g1 MSMg01no329_i06.g1 CHROMAT_FILE:
MSMg01no329_i06.g1 PHD_FILE: MSMg01no329_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:00 2005
         (429 letters)



>mm_chr16_92419888_92420716
          Length = 829

 Score =  768 bits (397), Expect = 0.0
 Identities = 421/429 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggagtagggaatggtgaagagttctcatggtctctccagttctctcagcttcacacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggagtagggaatggtgaagagttctcatggtctctccagttctctcagcttcacacc 260

                                                                       
Query: 61  gtgccgtccgtttgttcaatgagcaccagccatggtgggggctctgactgggccaattcc 120
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gtgccgtccgtttgttcaatgaacactagccatggtgggggctctgactgggccaattcc 320

                                                                       
Query: 121 tctttgaactgatggcttcacagggcacatgtgtccacccaaagagactgtcaggacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgaactgatggcttcacagggcacatgtgtccacccaaagagactgtcaggacact 380

                                                                       
Query: 181 gggcatagacactccacccaatgttcctgctggcactggtggctttaaagtagtcccaga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gggcatagacactccacccaatgttcctgctggcgctggtggctttaaagtagtcccaga 440

                                                                       
Query: 241 gggttaaggcagagagcccccactgcccccaccccagtcctggctttaaggtgtctgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggttaaggcagagagcccccactgcccccaccccagtcctggctttaaggtgtctgaga 500

                                                                       
Query: 301 ttgaaagcagagcctcccacagactaggcaagagctctacccccgccctatatctctagc 360
           || |||||||||||||||||||||||||||||||||||||||| |  |||||||||||||
Sbjct: 501 ttaaaagcagagcctcccacagactaggcaagagctctacccctgggctatatctctagc 560

                                                                       
Query: 361 ccccttttactctgtattctgagacaaggtctcactaagttgcccactggctggtcttga 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 ccccttttactctgtattctgagacaaggtctcactaagttgcccactggctggccttga 620

                    
Query: 421 attcattct 429
           |||||||||
Sbjct: 621 attcattct 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)