BAC Information

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BAC

Clone NameMSMg01-330P11
Chromosome16 (Build37)
Map Location 73,680,897 - 73,681,209
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330P11.T7 (MSMg01no330_p11.b1)MSMg01-330P11.TJ (MSMg01no330_p11.g1)
ACCAG447384AG447385
length759759
length of high quality
(start - end)
321 (45 - 365)309 (387 - 695)
definitionCHROMAT_FILE: MSMg01no330_p11.b1 PHD_FILE: MSMg01no330_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:47 2005CHROMAT_FILE: MSMg01no330_p11.g1 PHD_FILE: MSMg01no330_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAAAGCACATCTTATTCACACAAAGAAACAAACAGATAAACAAAA
CCACTGTGGAGCTTGTTGTAAGCCGTTCAGATGTGAATCTTTGAGTGCTT
ATGGATGCGTAACAAGTTAGACTCTGTTTTACTTTCACGACCCTTTAGGA
AAGAGAGCCATTTTAACTGTAAAATATAGTAAGACCTGTGCAATAAGAAC
GTACATTTTGCGTTGACTTGGCGCATGTCTTGCTTCACGTTGCTTACTTA
ATGAGTAAGTCACATTAAGACATAGCAATTCCTCTGCTGCTGTTCTCTTC
CTAGTTATTCTGTTTTTTTAACACACCCGCACATTCTGTAAGGCTTCCAA
TCTGTGGTTTTCACTTGCCGAATAAAGTTGAGCGGAACTAATTTTTGAAA
TTGTACATTTTCAAAATATCAATAGTCGGCCAACATCTTAAGAAAAGATC
TTTTTTAAAACCAGACCTATATAAATACAAAAATCTCCATAAGAACTTTT
TTTTTGTGTATTTGCAAAAGAGATTGTCTATTTCTTAGGCATCATAGGAT
CGTGTGAACATTTCAACCCTTTCGAATCCCATAGACAAAGACTGTTTTAT
TTGTTTATATTTTAAATGTATCCCACTTAGGAGACATTTGCATTTAAATA
ATGAAATCCACCCTCAACAACAAACTAAATATAGAATGTCAGAATCAAAG
TTATTTTTA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTGCTTTTCATCACAGCTCTAG
AAAAATCTGCCACAAGGCAATGAGAACAATGAATGGCATACCAGTAACAC
AAGGAAACAACAGATACAGTTAAATTTTAAAATAAAGACATTGAACCTGA
TGAATAAGACTCATTATTACAACAAAAGTCCAAAACTAGAGTCTAAGCTA
AACCAGTTCAGTACAATTTCCTATATTACTTTCAGTAACATAGAGGAGGT
AATAGCCAATCAGCTCATGGCTGGGAAAAATGAAAATCATCATCAAAGTT
GTTTTTAATATTTTACAAATGTCTGTGCTTCAACTGGTTGTTATCATGTA
GAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCT
AAATGGATCAAAGAACTTCACATAAAACCAGAGACACTGAAACTTATAGA
GGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCC
TGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGATTTGACAAATGG
GACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAA
GACAAAGAGACCACCAACAGATTGGGAAAGGATCTTTACCTACCCTAAAT
CAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGAC
TTCAGAANA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_p11.b1 MSMg01no330_p11.b1 CHROMAT_FILE:
MSMg01no330_p11.b1 PHD_FILE: MSMg01no330_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:47 2005
         (321 letters)



>mm_chr16_73680693_73681412
          Length = 720

 Score =  567 bits (293), Expect = e-166
 Identities = 309/315 (98%), Gaps = 3/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaaagcacatcttattcacacaaagaaac-aaacagataaacaaaaccactgt 63
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcccaaagcacatcttattcacacaaagaaacgaaacagataaacaaaaccactgt 264

                                                                       
Query: 64  ggagcttgttgtaagccgttcagatgtgaatctttgagtgcttatggatgcgtaacaagt 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggagcttgttgtaagctgttcagatgtgaatctttgagtgcttatggatgcgtaacaagt 324

                                                                       
Query: 124 tagactctgttttactttcacgaccctttaggaaagagagccattttaactgtaaaatat 183
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagact--gttttactttcacgaccctttaggaaagagagccattttaactgtaaaatat 382

                                                                       
Query: 184 agtaagacctgtgcaataagaacgtacattttgcgttgacttggcgcatgtcttgcttca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtaagacctgtgcaataagaacgtacattttgcgttgacttggcgcatgtcttgcttca 442

                                                                       
Query: 244 cgttgcttacttaatgagtaagtcacattaagacatagcaattcctctgctgctgttctc 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 443 cgttgcttacttaatgagtaattcacattaagacatagcaattcctctgctgctgctctc 502

                          
Query: 304 ttcctagttattctg 318
           |||||||||||||||
Sbjct: 503 ttcctagttattctg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)