BAC Information

Click to search

BAC

Clone NameMSMg01-332J14
Chromosome16 (Build37)
Map Location 35,101,167 - 35,277,725
singlet/doubletdoublet
Overlap genePtplb, Adcy5
Upstream geneKalrn, Ropn1, Ccdc14, Mylk
Downstream geneSec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332J14.T7 (MSMg01no332_j14.b1)MSMg01-332J14.TJ (MSMg01no332_j14.g1)
ACCAG448586AG448587
length1,3171,291
length of high quality
(start - end)		602 (137 - 738)666 (88 - 753)
definitionCHROMAT_FILE: MSMg01no332_j14.b1 PHD_FILE: MSMg01no332_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:13 2005CHROMAT_FILE: MSMg01no332_j14.g1 PHD_FILE: MSMg01no332_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,101,167 - 35,101,768)(35,277,063 - 35,277,725)
sequence
NNNGCCGGTTATGTGGNNNCCATTGGGCGCTAAGACTCCTATGGGAGAGG
ATCCGCGGAATTCTTTGGCTTATTTTTCTCTACCTACCCTCGCCAGNTCT
TCTCCACTGCCCTGCCTAACGTTATAGATTGGNAANAGGGAAAATGANTT
GTTTCTGGGCAGATTCTTGTGCCTGGAAGCTTAATCCAGGTTAATTTTGA
GCCGTAAATGGCTACAGTTTCTTGAATTTGAGCTGAGACAATTTCCACAG
GGATGATGGTGCCTCATGTATGTACATGTTTGGTCTGCAGGTATCTGTAT
CCACGAACATGCCCGCTGCCTGCAGAGGCCAGAAGACCTTTTAGTGGCTG
TGAGCAACCACATGTGTGCTTAGGAATTGAACCCTGGTCCTCTGCAAGAG
CAACGAGTGCTTTTAACCACTGAGCCCTCTCTCCTGTTCCCTCTGAATTC
TTTTAAAAGAGATAAAAACTTTTTAAAATGAAAATAATTGTGTGAACACC
TCATGAAATAGTAATTTATCTGTGTGGGTTTGTTTGTAAAATTCAAAGCT
ATTAGGAATTTTCTAATGTTAAAATTAGTCAAGATTTTATTTTCACAGTA
GTTTGTATGGGCATTTTGGAAGTAGCAGAATGTAGCTGTGTAATGTACTG
TTTCCTTCAGTCTGCATGCAGCTTGGCGTGCCTTAAGGATTTCTGGATGG
CTGCTCCATCTCCTTCCTTTCCGTCCCCACAGGGAAGGAAGGCCCTTGTT
AGAGATTAATGCCCCTACTCTACCGTTCTAAAGCTGCATGTTCTGAAAGA
GCCAGGTTTTGAAGCTGACTGACAGTTACTTTGCTTTAGAACATTTGGAA
ACATTTGGGAACCTACCATGGGCGCTTTCAAAAACTGGCGTATAAAGGGT
AAATAAAAACGGGGAATGGAGGTGGTGAACAAAACTTTTTTATAAAAGGG
GGGTTGTTAAAATATGTTTTAAAGCTCCCCGGAGGGGTTTTTTCTGTTTT
TGGAAACACATTTTTTTTCTGGTGGTCCCACGGGGGGGAAGGGAGAGGTC
CCCCCAAATACCCAACTTTCCCTTCGTTTGGGGGTGGGGCGGTTTTCTTT
CCTTTTCCTAAAAAAAAAATTCCTCTTTTTTCATGGTTCCGATGGAGAGG
TACCCCCCTTCCCCACCGCATTTTTGTTAAAGGGTTTTCGNNCAACAAAC
CTTCTCTTGTGAAAAAACACTTANGGGTGTGTTTTTTCTCGTCTCTAACA
TTTTTCCTTCTTAAANATTCTACTTGTTCCCTGTGTGTTTCTTGCTTNAT
TCTCTTCTTTTTCTTTA

CCCCTCTTTNNNNCTGAGGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCATAAAGAGCCCCTGACCCATTTC
ATTCTGAGAACCTGGCTTGGCAGATCCCAGGAAGGACTTCCACATGAGCC
AGGGCTGGGAGGTGCTGAACAGACATGGCAGTCCCGTGCCATGGAAGCCT
CTAGGGGGTTCCCTGCTGTCACTCTGACCTGCACCCAGGTGCCTACACCT
AGTCTAGGATGGCCTGCCACTCAGTCAGTTTGTCTGCTCAGACCAGCCTG
ATCCTTCTTCCTATCCCCTGAGAATCACCCCACCCTCTCTTTAGACTGTA
GGGATCTCCCAGCTGTGGAAGTGGGTGTCACACAGCTGAGCATCTTGTCT
GGGGACGGGTCCATGCCTGTGCTCTCCTCATGACCCCTCAATGAGCCCAG
CACAGCCAGATCAGAGACGGGCAGGCAAGCTGTCTTCAAGATGCCGCTAT
GAGCCTCCAGATCACGGAGTTCCATCCCATGAGCCAGCAAAAACTATACA
ACTGGGAACAGTGGTACTGTACCTATGCAGGCCCATCTCCACAGATCAAA
AATACCCTGATGTGCCTGCCTCCTAGCCACTGTGGAGGACACACTTTCTT
TCCTGTTCTGGGAAGAGAGCTGGATTGAACCTCAGCACCCAGGGGATGCC
ATGCCATGTTGGCATAGACAGTGCAGGATCCACTGAAGGTGGTGTGCAGT
GACAGCAGGGTAGAAGGCATTGTTAGCAATCAAACAGCTTGGCACTGCCC
CTAAGAACAGGCCAGGGCTGGACTGTGGCTCAAGGCTGGACACAAACCCC
TATGGGTTCCCTCTCTAGCACTTCCACCCACCAAACTGCACGCATCCACT
CTACCACCCACCCATCTGGGCACCTAAGCCTCATTCAATTAAATGGGACC
ATTCTCTTCTCATGTCTATCCATACAAAAAAGTTTCTTTCCACTTCCTTG
GCCTGTTGGACCCACTAGGTCAAACCCCTGTCCTTGTTTTATCCTCCTGT
ATCTCTTCCTATTTCTCTCCCTTCCTCCCTTTTTTAACATTTAACCTTAA
CCCTTTGCATAGGTCTCTTTTTCTTATCAAACTCTTTTATCTTAGTTGTT
TGCTTATTTTAACTCATTTTCCTCATAATCTTTTCACACTACTATGTTTC
CCCTTCATACAATTTCCTCCGATTTACAACTCTCTATTACATCTCTACCT
CTCTTGTAACCATTTTTCTTTCAAATTATATATCTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_j14.b1 MSMg01no332_j14.b1 CHROMAT_FILE:
MSMg01no332_j14.b1 PHD_FILE: MSMg01no332_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:13 2005
         (602 letters)



>mm_chr16_35100967_35101968
          Length = 1002

 Score = 1135 bits (587), Expect = 0.0
 Identities = 598/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaaaatganttgtttctgggcagattcttgtgcctggaagcttaatccaggttaatt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggaaaatgacttgtttctgggcagattcttgtgcctggaagcttaatccaggttaatt 260

                                                                       
Query: 61  ttgagccgtaaatggctacagtttcttgaatttgagctgagacaatttccacagggatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagccgtaaatggctacagtttcttgaatttgagctgagacaatttccacagggatga 320

                                                                       
Query: 121 tggtgcctcatgtatgtacatgtttggtctgcaggtatctgtatccacgaacatgcccgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtgcctcatgtatgtacatgtttggtctgcaggtatctgtatccacgaacatgcccgc 380

                                                                       
Query: 181 tgcctgcagaggccagaagaccttttagtggctgtgagcaaccacatgtgtgcttaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctgcagaggccagaagaccttttagtggctgtgagcaaccacatgtgtgcttaggaa 440

                                                                       
Query: 241 ttgaaccctggtcctctgcaagagcaacgagtgcttttaaccactgagccctctctcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaaccctggtcctctgcaagagcaacgagtgcttttaaccactgagccctctctcctg 500

                                                                       
Query: 301 ttccctctgaattcttttaaaagagataaaaactttttaaaatgaaaataattgtgtgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccctctgaattcttttaaaagagataaaaactttttaaaatgaaaataattgtgtgaa 560

                                                                       
Query: 361 cacctcatgaaatagtaatttatctgtgtgggtttgtttgtaaaattcaaagctattagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacctcatgaaatagtaatttatctgtgtgggtttgtttgtaaaattcaaagctattagg 620

                                                                       
Query: 421 aattttctaatgttaaaattagtcaagattttattttcacagtagtttgtatgggcattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattttctaatgttaaaattagtcaagattttattttcacagtagtttgtatgggcattt 680

                                                                       
Query: 481 tggaagtagcagaatgtagctgtgtaatgtactgtttccttcagtctgcatgcagcttgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggaagtagcagaatgtagctgtgtaatgtactgtttccttcagtctgcatgcagcttgg 740

                                                                       
Query: 541 cgtgccttaaggatttctggatggctgctccatctccttcctttccgtccccacagggaa 600
           ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 cgtgccttagggattcctggatggctgctccatctccttcctctccgtccccacagggaa 800

             
Query: 601 gg 602
           ||
Sbjct: 801 gg 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no332_j14.g1 MSMg01no332_j14.g1 CHROMAT_FILE:
MSMg01no332_j14.g1 PHD_FILE: MSMg01no332_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:13 2005
         (666 letters)



>mm_chr16_35276860_35277925
          Length = 1066

 Score = 1205 bits (623), Expect = 0.0
 Identities = 653/663 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gacccatttcattctgagaacctggcttggcagatcccaggaaggacttccacatgagcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gacccatttcattctgagaacctggcttggcagatcccaggaaggacttccacatgagcc 807

                                                                       
Query: 64  agggctgggaggtgctgaacagacatggcagtcccgtgccatggaagcctctagggggtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agggctgggaggtgctgaacagacatggcagtcccgtgccatggaagcctctagggggtt 747

                                                                       
Query: 124 ccctgctgtcactctgacctgcacccaggtgcctacacctagtctaggatggcctgccac 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 746 ccctgctgtcactctgacctgcactcaggtgcctacacctagtctaggatggcctgccac 687

                                                                       
Query: 184 tcagtcagtttgtctgctcagaccagcctgatccttcttcctatcccctgagaatcaccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 686 tcagtcagtttgtctgctcagaccagcctgatccttcttcctatcccctgagaattaccc 627

                                                                       
Query: 244 caccctctctttagactgtagggatctcccagctgtggaagtgggtgtcacacagctgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caccctctctttagactgtagggatctcccagctgtggaagtgggtgtcacacagctgag 567

                                                                       
Query: 304 catcttgtctggggacgggtccatgcctgtgctctcctcatgacccctcaatgagcccag 363
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 catcttgtctggagaagggtccatgcctgtgctctcctcatgacccctcaatgagcccag 507

                                                                       
Query: 364 cacagccagatcagagacgggcaggcaagctgtcttcaagatgccgctatgagcctccag 423
           |||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 506 cacagccagagcacagacgggcaggcaagctgtcttcaagatgccgctgtgagcctccag 447

                                                                       
Query: 424 atcacggagttccatcccatgagccagcaaaaactatacaactgggaacagtggtactgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcacggagttccatcccatgagccagcaaaaactatacaactgggaacagtggtactgt 387

                                                                       
Query: 484 acctatgcaggcccatctccacagatcaaaaataccctgatgtgcctgcctcctagccac 543
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 386 acctatgcaggcccatctccacagatcaaaaataccctgacgtgcctgcctcctagccac 327

                                                                       
Query: 544 tgtggaggacacactttctttcctgttctgggaagagagctggattgaacctcagcaccc 603
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 326 tgtggaggacacactttctttcctgttccgggaagagagctggattgaacctcagcaccc 267

                                                                       
Query: 604 aggggatgccatgccatgttggcatagacagtgcaggatccactgaaggtggtgtgcagt 663
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggggatgccatgccatgttggcgtagacagtgcaggatccactgaaggtggtgtgcagt 207

              
Query: 664 gac 666
           |||
Sbjct: 206 gac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |