BAC Information

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BAC

Clone NameMSMg01-333M08
Chromosome16 (Build37)
Map Location 7,094,643 - 7,094,982
singlet/doubletsinglet
Overlap geneA2bp1
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333M08.T7 (MSMg01no333_m08.b1)MSMg01-333M08.TJ (MSMg01no333_m08.g1)
ACCAG449437AG449438
length727720
length of high quality
(start - end)
347 (73 - 419)340 (82 - 421)
definitionCHROMAT_FILE: MSMg01no333_m08.b1 PHD_FILE: MSMg01no333_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:01 2005CHROMAT_FILE: MSMg01no333_m08.g1 PHD_FILE: MSMg01no333_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGGTGCGCGGAA
TTCCCTATNTTGCCCATAAGGTACAAGGGAGTAGTGAAGCAACACCGGAA
GCTAATGATTGGAGAGCATTATCTAGGAGAAGACTAATGCAAAATTATAA
GTAAATGTCAGATGGAATCCTGGATAGGATCACGAGACAATAAAAGAGGG
ATAAGTGGGCAAACTATGCCACCACAATGCACTCTTCAGTCTAGTGTAGA
GTGCTGTGTCAATAGCCATTCCCTGGTTCTTGTCTCTGTGTGTGTGTGTG
TGTGCTGTGGATAAGATGTTATCATGGGTGAATTCAGATTGCTGTTTTCT
GTACTATGTTTTTGCAACATTTCTGGAGGTCTAGAGCTATCCCAAACTAA
TGACTTAAAAAAAAACCCCCCCCACCAAAGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGAGAGG
AAAGGAAGGTACTGTTTCTTTTTTTTCCCCTTCTTTCTACCCATTCGTTT
TTTTTTATTTCTTTCATTGACAACATAATATATTCCTCAATTAATTAATT
TATTATCCACTAAGTTATGTTTATCCTTTACCTTTTTTTCTTATTATACC
CCGCACTTTTTTTTTCTATACTATTTCACTTATCGCTGCCTTTTATTTCT
CCCATTTATCTTTTTTCTTTCTCTTCA
ATATTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCTTGGTCCACCATTT
GGTGCTGTGATCTTGACACCCAGCCCACTGCCTGAACATGAATGGATATG
CAATACCTTCTTAATGAATAATGATTAGATGATCATATCAGCCCCACTAC
TGGTCACACCACATCAATCAATGTGGCAGAGGCCCAAGGCTAAGACCTAC
AACCTTACCAGAAGAAAATTCTTAGATTTGCCTCCTATCTTTGGAATAAA
CAAATTACAAGGGCCTTATCTCAGGACGTATACATCCCCTCCCACACAAA
GGGACTCTCCGTTCTGGCCTTGACCTCATTTTGCCTCAGGCAGAATGCTT
TTGGCTGTCAGCTGTGAGAAGCTCCCCCACATCACGTGGAAGGAGGTGTA
AATGACCCTGAAGGTTAAAAGGGAAAGAAATGATCGCCCAAGGGGTTGTG
AAACAGTTTAAAGATTCACTGTGTTCATTTTGGACATGGATGTAAGGAAA
CTGGCTTCTCAGACCCTCTGTGATGAAGAAATAACTGGCAAAGCCATCTG
CCAAAGTGAAGTTTGATGGCGTCTGTCAGAATAGTGACTGTATAACCCTT
TAGAACTAAGCATTCTGCCTCTGGAATTCTACTGCGACTGAATCGTATAC
ACTCCCACACTATTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_m08.g1 MSMg01no333_m08.g1 CHROMAT_FILE:
MSMg01no333_m08.g1 PHD_FILE: MSMg01no333_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:01 2005
         (340 letters)



>mm_chr16_7094443_7095182
          Length = 740

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatccttggtccaccatttggtgctgtgatcttgacacccagcccactgcctgaacatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aatccttggtccaccatttggtgctgtgatcttgacacccagcccactgcctgaacatga 481

                                                                       
Query: 61  atggatatgcaataccttcttaatgaataatgattagatgatcatatcagccccactact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atggatatgcaataccttcttaatgaataatgattagatgatcatatcagccccactact 421

                                                                       
Query: 121 ggtcacaccacatcaatcaatgtggcagaggcccaaggctaagacctacaaccttaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggtcacaccacatcaatcaatgtggcagaggcccaaggctaagacctacaaccttaccag 361

                                                                       
Query: 181 aagaaaattcttagatttgcctcctatctttggaataaacaaattacaagggccttatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aagaaaattcttagatttgcctcctatctttggaataaacaaattacaagggccttatct 301

                                                                       
Query: 241 caggacgtatacatcccctcccacacaaagggactctccgttctggccttgacctcattt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caggacgtaaacatcccctcccacacaaagggactctccgttctggccttgacctcattt 241

                                                   
Query: 301 tgcctcaggcagaatgcttttggctgtcagctgtgagaag 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgcctcaggcagaatgcttttggctgtcagctgtgagaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)