Query= MSMg01no335_m05.b1 MSMg01no335_m05.b1 CHROMAT_FILE:
MSMg01no335_m05.b1 PHD_FILE: MSMg01no335_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:38 2005
(564 letters)
>mm_chr16_12134381_12135344
Length = 964
Score = 982 bits (508), Expect = 0.0
Identities = 551/572 (96%), Gaps = 12/572 (2%)
Strand = Plus / Minus
Query: 5 gaattcatctactcatacaacattctaagaaagataattctaggtggaaggatcagcaga 64
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 653 gaattcatctactcataaaacattctaagaaagataattctaggtggaagaatcagcaga 594
Query: 65 tgcaaaactctaggacagggtcaagcttgacatccttagagaacatccaaaggctaggag 124
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 593 tgcaaaactctaggacagggtcaagcttgacatccttagagaacatcgaaaggctaggaa 534
Query: 125 ggacaaagctgagcaagagagggagccacatgcagtagatttagaagtaaattctcaaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggacaaagctgagcaagagagggagccacatgcagtagatttagaagtaaattctcaaca 474
Query: 185 tgggctatgccttgacttgatttgagaaccatgagaagactttgggaatctataagacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgggctatgccttgacttgatttgagaaccatgagaagactttgggaatctataagacaa 414
Query: 245 taaatggctgattccaacttttccccagcatgttttctgcccattctacttctctatctt 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taaatggctgattccaactttcccccagcatgttttctgcccattctacttctctatctt 354
Query: 305 ttc------tt------tccattttgctttcatccagaatctccaagagtcctgagtgta 352
||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttctacattttaaaatatccactttgctttcatccagaatctccaagagtcctgagtgta 294
Query: 353 ttagatagcctctgtttggtcacaggaagcagggaaataactaatacaacaaatgactgt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttagatagcctctgtttggtcacaggaagcagggaaataactaatacaacaaatgactgt 234
Query: 413 tggcttaactatataccttctcattgcaagcttcctaagggtgggggatttatgtccagc 472
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 233 tggcttaactatataccttctcattgcaagcttcctaagggtgggggacttatgtccagc 174
Query: 473 cttcacaatacattgttcagtctgctatgtacatactatgacctgagcttacactgagag 532
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 173 cttcacaatacattgttcagtctactatgtacatactatgagctgagcttacactgagag 114
Query: 533 aaaatctctcaccaaaccctccttattagctt 564
||||||||||||||||||||||||||||||||
Sbjct: 113 aaaatctctcaccaaaccctccttattagctt 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_m05.g1 MSMg01no335_m05.g1 CHROMAT_FILE:
MSMg01no335_m05.g1 PHD_FILE: MSMg01no335_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:38 2005
(427 letters)
>mm_chr16_11989650_11990476
Length = 827
Score = 795 bits (411), Expect = 0.0
Identities = 423/427 (99%)
Strand = Plus / Plus
Query: 1 caatttgtaattcctgtcccattctggagctctgggaactgcacctgtggttttcacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatttgtaattcctgtcccattctggagctctgggaactgcacctgtggttttcacaga 260
Query: 61 gcagctgctggctgtggctgggtggtgaccacccccttcggagagctcttgggatgagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagctgctggctgtggctgggtggtgaccacccccttcggagagctcttgggatgagag 320
Query: 121 taagagggtttatgtgaacagcacatgctcccagtagatctagtgaagtctcttaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagagggtttatgtgaacagcacatgctcccagtagatctagtgaagtctcttaatatt 380
Query: 181 tgggtgaccttgggaaggctgctttacatctctgcaactccggatcttatctacaggttg 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggtgaccttgggaaggctgcttcacatctctgcaactccggatcttatctacaggttg 440
Query: 241 agaattcagtgaggagcaggcttggaaagtgattagcatagagcccagccagaatcacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaattcagtgaggagcaggcttggaaagtgattagcatagagcccagccagaatcacta 500
Query: 301 cccagcatctttcttactggagttcttcctcttgtccactgaaggcggtgacgttgcagc 360
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 501 cccagcatctttcttactggagttcttcctcttgtccactgaaggcgatgacattgcagc 560
Query: 361 ttggacctcagtgcctggtccttactctactccgtgtcggtggtcaactctcctaacctc 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ttggacctcagtgcctggtccttactctactccgtgtcggtggccaactctcctaacctc 620
Query: 421 tctggat 427
|||||||
Sbjct: 621 tctggat 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
