BAC Information

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BAC

Clone NameMSMg01-336K07
Chromosome16 (Build37)
Map Location 86,758,175 - 86,758,423
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts1, Adamts5, LOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336K07.T7 (MSMg01no336_k07.b1)MSMg01-336K07.TJ (MSMg01no336_k07.g1)
ACCAG451612AG451613
length796740
length of high quality
(start - end)
---249 (68 - 316)
definitionCHROMAT_FILE: MSMg01no336_k07.b1 PHD_FILE: MSMg01no336_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:45 2005CHROMAT_FILE: MSMg01no336_k07.g1 PHD_FILE: MSMg01no336_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGCATCGCGCCCCTCTATTAATTTTGGCGGCCCGCTTAATAACGAACT
TCACCTTATTATCTCCCCAAAAAAAGAAATCCCCGNNCGGGAAAATTCCT
CTGTGGTTGCCTTAGCTTGTCCTGAAGGTCATTCTGGAAAACCAAGGGTA
AACTTTTGAAACTCAAGGATCCACCCTGAAATCTGCCTTCCAAAGGGGTA
AAAATTTAAAGGGGGGGACCCACCCCCTAAAAACTCGGCGGTTTAAATCT
AAAAGCGGCGAAAAAAAAAATAAACGGGGGGGAAATTGTGGTCTCCTCCC
CCCCCCCACGGGGGGCCCCCCGGGGGAAAAAAAAAACCATTTTGTTATAA
AATAAAGAAAAATATGTGGGGAAGAAGCCTCTTTTTTTGGGGGGGAGACC
CCCCCTTTTTCTTCTCCCCCCCCAAAAGAGGGTGGGAGAAAAAAAAAAAA
AAAAAATCTCTTTCACGAGAAGGGGTTTTTTTTTTTTAAAAAAGAAAACA
CCCCGGGGGGTGTTGTTTAAAAAAAAACCACCCACCAACACCAGGTGTGT
GTGTGGGGCCCCCCCCGCGGGGTGTATTTTTTTCTTCCGTAGAAGAGGGG
GGTCCCTCTTCCTTTTCCTCTTTTTCTTTTATTTTTCCCTGGGGTGAAAG
ATAAATTAACATTTTTCTTTCTTTTTTTTATCCTTCCATAATCTATATTC
TTAAGTTAAGGACCGGCCGGCCTCGGCGCCCCCCCCCCTCCCTCCCTCTT
TTTTCTTTTTTTTTTCTCTATATTATACTCCCCTCCCCTGCACGGG
ACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAAATGTGGGTAGAAGTGAAAATCCTTTCATG
AAAGATGCCAACTTTTCTAGCCATCTTATGGTCTTTCACCTTTATTGTTG
ATAGGTAAAAGATTTGGGTATTCTGAGAAAGATGAAACATAAGGACACTA
CTAGAGTGTAGGGCACAAAGAGGAGCTTTTTCCTCTGAACCAAACTGTAC
CTGCTCACAGTTCATATATTGAGAATATTGAATATATTTTCATATATTAA
TATTCATAAATTTGCTTTAGTGTGATTTCATTTGGGAATGAGGCTTTAAG
GAGGTGTTGAAAGAGGAGTGAGAGTGGCGGCTGGCTTCCATTTTGCTAGG
AGAGTTACCTAACCAAAATTGAAAGCTTTACCTTTCTCCATCATACCGGA
TTTAGCCCTTTGATAACCCAAAAAAGAATCCCCCCTCCGGGGTGGGTGCA
AAAGGTAGCACCCCCCCGTGCGGGGTTCAATTTAGGGGAAAAATTTGGTT
CGCCCCCTGTTTTTTTTGGGGCCCCCTTTTTTTTTTGGGGGGTATTAAAA
AAAAAAAAAAAAAAGTGGCACTATAAATAGGGGCTCCTACGTTGGTGTTT
GTTGTTTTCCCCCCATGCCTAATTTTGTTTCTCTCCCCCCCTTTTCCCCC
CGCTTTTCCTACATAACTCATCTTTCTCCTTTCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_k07.g1 MSMg01no336_k07.g1 CHROMAT_FILE:
MSMg01no336_k07.g1 PHD_FILE: MSMg01no336_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:45 2005
         (249 letters)



>mm_chr16_86757975_86758623
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaatgtgggtagaagtgaaaatcctttcatgaaagatgccaacttttctagccatctt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 449 tcaaatgtgggtagaagtgaaaatcctttcatgaaagatgccgacttttctagccatctt 390

                                                                       
Query: 61  atggtctttcacctttattgttgataggtaaaagatttgggtattctgagaaagatgaaa 120
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 389 atggtccttcacctttattgttgataggtaaaagatttgggtattatgagaaagatgaaa 330

                                                                       
Query: 121 cataaggacactactagagtgtagggcacaaagaggagctttttcctctgaaccaaactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cataaggacactactagagtgtagggcacaaagaggagctttttcctctgaaccaaactg 270

                                                                       
Query: 181 tacctgctcacagttcatatattgagaatattgaatatattttcatatattaatattcat 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tacctgctcacagttcatacattgagaatattgaatatattttcatatattaatattcat 210

                    
Query: 241 aaatttgct 249
           |||||||||
Sbjct: 209 aaatttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)