MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-336M07
Chromosome	16 (Build37)
Map Location	44,180,480 - 44,181,018
singlet/doublet	singlet
Overlap gene	Gm608
Upstream gene	LOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13
Downstream gene	Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC667484 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667484
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 2 Proteins pseudo : _no_value

name	Zbtb20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56490 MGI:1929213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043314 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043314
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 1 Protein

name	Drd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13490 MGI:94925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Qtrtd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106248 MGI:1922194
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610015P09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212153 MGI:1922661
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 1 Protein

name	Zdhhc23 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:332175 MGI:2685625
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gramd1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207798 MGI:2443024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp6v1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11964 MGI:1201780
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nat13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72117 MGI:1919367
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm608 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207806 MGI:2685454
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sidt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320007 MGI:2443155
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc52 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212514 MGI:1196252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr52 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212517 MGI:1277238
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 1 Protein

name	Boc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:117606 MGI:2151153
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043731 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	BC027231 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212547 MGI:2384836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gtpbp8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66067 MGI:1913317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd200r1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57781 MGI:1889024
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC271374 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:271374
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 19 Proteins pseudo : _no_value

name	F630003A18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319823 MGI:2442797
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd200r4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239849 MGI:3036289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546665 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546665
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Cd200r2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:271375 MGI:3042847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd200r3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74603 MGI:1921853
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433021 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433021 MGI:3647873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Ccdc80 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67896 MGI:1915146
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc35a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74102 MGI:1921352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atg3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67841 MGI:1915091
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9790132 GeneID:56490 MGI:1929213
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 20 transcript_id : NM_019778.1

name	LOC100043314 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267408 GeneID:100043314
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 1 Protein product : similar to poliovirus receptor-related 4 transcript_id : XM_001479949.1

name	Drd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6681220 GeneID:13490 MGI:94925
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dopamine receptor 3 transcript_id : NM_007877.1

name	Qtrtd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54144621 GeneID:106248 MGI:1922194
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : queuine tRNA-ribosyltransferase domain containing 1 transcript_id : NM_029128.2

name	2610015P09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267410 GeneID:212153 MGI:1922661
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 1 Protein product : RIKEN cDNA 2610015P09 gene transcript_id : XM_990993.2

name	Zdhhc23 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55925619 GeneID:332175 MGI:2685625
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, DHHC domain containing 23 transcript_id : NM_001007460.1

name	Gramd1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956283 GeneID:207798 MGI:2443024
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GRAM domain containing 1C transcript_id : NM_153528.1

name	Atp6v1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343848 GeneID:11964 MGI:1201780
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit A transcript_id : NM_007508.5

name	Nat13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892288 GeneID:72117 MGI:1919367
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-acetyltransferase 13 transcript_id : NM_028108.3

name	Gm608 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71274137 GeneID:207806 MGI:2685454
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 608, (NCBI) transcript_id : NM_001029889.1

name	Sidt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51036632 GeneID:320007 MGI:2443155
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SID1 transmembrane family, member 1 transcript_id : NM_198034.2

name	Ccdc52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366359 GeneID:212514 MGI:1196252
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 52 transcript_id : NM_144550.3

name	Wdr52 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267412 GeneID:212517 MGI:1277238
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 1 Protein product : WD repeat domain 52 transcript_id : XM_991190.2

name	Boc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344121 GeneID:117606 MGI:2151153
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein transcript_id : NM_172506.2

name	BC027231 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801841 GeneID:212547 MGI:2384836
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC027231 transcript_id : NM_145972.2

name	Gtpbp8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360315 GeneID:66067 MGI:1913317
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP-binding protein 8 (putative) transcript_id : NM_025332.2

name	Cd200r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254537 GeneID:57781 MGI:1889024
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD200 receptor 1 transcript_id : NM_021325.2

name	F630003A18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352179 GeneID:319823 MGI:2442797
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA F630003A18 gene transcript_id : NM_177010.3

name	Cd200r4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131039 GeneID:239849 MGI:3036289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Cd200 receptor 4 transcript_id : NM_207244.2

name	Cd200r2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45504372 GeneID:271375 MGI:3042847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Cd200 receptor 2 transcript_id : NM_206535.1

name	Cd200r3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369513 GeneID:74603 MGI:1921853
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD200 receptor 3 transcript_id : NM_029018.3

name	EG433021 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400210 GeneID:433021 MGI:3647873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG433021 transcript_id : XM_488779.3

name	Ccdc80 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625751 GeneID:67896 MGI:1915146
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 80 transcript_id : NM_026439.2

name	Slc35a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388911 GeneID:74102 MGI:1921352
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 35, member A5 transcript_id : NM_028756.3

name	Atg3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373537 GeneID:67841 MGI:1915091
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : autophagy-related 3 (yeast) transcript_id : NM_026402.2

name	Zbtb20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790133 CCDS:CCDS28178.1 GeneID:56490 MGI:1929213
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : POZ/zinc finger transcription factor; POZ/zinc finger transcription factor ODA-8; zinc finger protein 288 product : zinc finger and BTB domain containing 20 protein_id : NP_062752.1

name	LOC100043314 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267409 GeneID:100043314
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479999.1

name	Drd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681221 CCDS:CCDS28179.1 GeneID:13490 MGI:94925
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : D3 receptor product : dopamine receptor 3 protein_id : NP_031903.1

name	Qtrtd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54144622 GeneID:106248 MGI:1922194
definition	GO_function : GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008616 - queuosine biosynthesis [Evidence IEA] codon_start : 1 product : queuine tRNA-ribosyltransferase domain containing 1 protein_id : NP_083404.2

name	2610015P09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149267411 GeneID:212153 MGI:1922661
definition	codon_start : 1 product : hypothetical protein LOC212153 protein_id : XP_996087.2

name	Zdhhc23 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55925620 CCDS:CCDS28180.1 GeneID:332175 MGI:2685625
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : nNOS-intereacting DHHC-containing Dem protein-L product : DHHC-containing protein 11 protein_id : NP_001007461.1

name	Gramd1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956284 CCDS:CCDS28181.1 GeneID:207798 MGI:2443024
definition	codon_start : 1 product : GRAM domain containing 1C protein_id : NP_705756.1

name	Atp6v1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560731 CCDS:CCDS28182.1 GeneID:11964 MGI:1201780
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0016469 - proton-transporting two-sector ATPase complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : 70-kDa subunit; lysosomal 70kDa; ATPase, H+ transporting, V1 subunit A1; ATPase, H+ transporting, lysosomal (vacuolar proton pump), alpha 70 kDa, isoform 2; ATPase, H+ transporting, lysosomal 70kD, V1 subunit A, isoform 1 product : ATPase, H+ transporting, V1 subunit A, isoform 1 protein_id : NP_031534.2

name	Nat13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312422 CCDS:CCDS28183.1 GeneID:72117 MGI:1919367
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : Mak3 homolog product : Mak3p homolog protein_id : NP_082384.1

name	Gm608 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71274138 CCDS:CCDS28184.1 GeneID:207806 MGI:2685454
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC207806 protein_id : NP_001025060.1

name	Sidt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51036633 CCDS:CCDS28185.1 GeneID:320007 MGI:2443155
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : SID1 transmembrane family, member 1 protein_id : NP_932151.2

name	Ccdc52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559964 GeneID:212514 MGI:1196252
definition	codon_start : 1 exception : mismatches in translation product : coiled-coil domain containing 52 protein_id : NP_653133.2

name	Wdr52 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149267413 GeneID:212517 MGI:1277238
definition	codon_start : 1 product : WD repeat domain 52 protein_id : XP_996284.2

name	Boc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27777681 CCDS:CCDS28186.1 GeneID:117606 MGI:2151153
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0016202 - regulation of striated muscle development [Evidence ISS]; GO:0007224 - smoothened signaling pathway [Evidence IDA] codon_start : 1 note : Biregional Cdon binding protein product : brother of CDO protein_id : NP_766094.1

name	BC027231 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122411 CCDS:CCDS28187.1 GeneID:212547 MGI:2384836
definition	codon_start : 1 product : hypothetical protein LOC212547 protein_id : NP_666084.1

name	Gtpbp8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313623 CCDS:CCDS28188.1 GeneID:66067 MGI:1913317
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA] codon_start : 1 product : GTP-binding protein 8 protein_id : NP_079608.1

name	Cd200r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946634 CCDS:CCDS28189.1 GeneID:57781 MGI:1889024
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IDA] codon_start : 1 note : Orexin receptor 2; antigen identified by monoclonal antibody MRC OX-2 receptor product : CD200 receptor 1 protein_id : NP_067300.1

name	Cd200r4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402237 GeneID:239849 MGI:3036289
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IDA] codon_start : 1 note : CD200 cell surface glycoprotein receptor product : Cd200 receptor 4 protein_id : NP_997127.1

name	F630003A18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892873 GeneID:319823 MGI:2442797
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : similar to Cd200 receptor protein_id : NP_795984.1

name	Cd200r2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45504373 CCDS:CCDS28191.1 GeneID:271375 MGI:3042847
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IDA] codon_start : 1 product : CD200 cell surface glycoprotein receptor protein_id : NP_996258.1

name	Cd200r3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45433592 GeneID:74603 MGI:1921853
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IDA] codon_start : 1 note : CD200 cell surface glycoprotein receptor 3 product : CD200 receptor 3 protein_id : NP_083294.2

name	EG433021 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82959389 GeneID:433021 MGI:3647873
definition	codon_start : 1 product : hypothetical protein protein_id : XP_488779.2

name	Ccdc80 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625752 CCDS:CCDS28192.1 GeneID:67896 MGI:1915146
definition	codon_start : 1 note : steroid sensitive gene 1 product : steroid-sensitive protein 1 protein_id : NP_080715.2

name	Slc35a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229173 CCDS:CCDS28193.1 GeneID:74102 MGI:1921352
definition	GO_component : GO:0000139 - Golgi membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0005338 - nucleotide-sugar transporter activity [Evidence IEA]; GO:0005351 - sugar porter activity [Evidence IEA] GO_process : GO:0015780 - nucleotide-sugar transport [Evidence IEA] codon_start : 1 product : solute carrier family 35, member A5 protein_id : NP_083032.2

name	Atg3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385890 CCDS:CCDS28194.1 GeneID:67841 MGI:1915091
definition	GO_component : GO:0000153 - cytoplasmic ubiquitin ligase complex [Evidence ISS] GO_function : GO:0008639 - small protein conjugating enzyme activity [Evidence ISS] GO_process : GO:0006914 - autophagy [Evidence IEA]; GO:0006464 - protein modification [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : autophagy-related 3-like; APG3 autophagy 3-like product : autophagy Apg3p/Aut1p-like protein_id : NP_080678.1

name	LOC100043731 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043731
definition	number : 1 pseudo : _no_value

name	LOC271374 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:271374
definition	number : 2 pseudo : _no_value

name	LOC271374 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:271374
definition	number : 1 pseudo : _no_value

name	LOC546665 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546665
definition	number : 2 pseudo : _no_value

name	LOC546665 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546665
definition	number : 1 pseudo : _no_value

name	LOC667484 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149267537 GeneID:667484
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 2 Proteins product : similar to Ran-interacting protein MOG1 pseudo : _no_value transcript_id : XR_034984.1

clone name	MSMg01-197D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518O24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-304K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180P09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-529K15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-537A14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-358N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440P17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-394L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127E01
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-336M07.T7 (MSMg01no336_m07.b1)	MSMg01-336M07.TJ (MSMg01no336_m07.g1)
ACC	AG451707	AG451708
length	748	782
length of high quality (start - end)	543 (43 - 585)	281 (74 - 354)
definition	CHROMAT_FILE: MSMg01no336_m07.b1 PHD_FILE: MSMg01no336_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:55 2005	CHROMAT_FILE: MSMg01no336_m07.g1 PHD_FILE: MSMg01no336_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:56 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT TCAGCCATTTCTGTTTGTTTGTTTGTTTTTGGCTTTTTGAGACAGGATTT CTTTGTGTAGCCTTGGCTGTTCTGGAACTTGGTCTATAGACAAGGCTGCC CTCGAACTCCCTAGTGATGGGATTAAAGGCATGTGTCACCACACTGCAAA TCCAACCAAAAATATTGGGAGAACTTTTTAGCTACCCTGAGTATTTACAC ATGCTTTCCCCTTGTGACACTTTCTAAAGTACATATAGTATGGGCCTCTG TGGTACTGTGCATGATCTCAGCACTTGAGACACTCAGGCAGGAGCATAAA AATGTGAGGATAGTCTGGGCTATATAGTACAATCTTGCTCACAAAATAAA ACCTCAAAAGCACTACAGTATTAACAGATGTATCCATGCACTGCATAGTG ATGTTTACTTCCTCATAGCCTACAAGTCCAACAGGGCTCCCCTAACACTG TAAAGGAGTTGAAGAGTCCTATTACTTCATATGTACTGTGCCTTTTCTTT CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTTCTTCCTTCCTTCCTTCCCTTTCTTCCCTTCCTTCCTTCCTTCCCTTC CTTCCCTTCCTTTCTTTCCTTTCTTTTTTAAGAATTAATTTATTATTAAA TTCTAAAAAACCCTGTTACCTGTCTTTTCCAAGGACCCAAAAAAAAGG	TTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXAAGTATAGGATGTTCCTTTAAAAGTTA TTTGATTACAGTTGTGTAGCTTGGTGTGTTTGTGGGACTCTGAACAGAGA GAGGGTAGGCTGTTTCTGACGCTGTTGCCTGCCCTTGGAAACCTTGTCTT GTTGCCTCATTCAGTCATTCAGTCTTGATACAAGGTATGTGCCTAGTCTT ACTGCAACTTGATACGCCATGTTTAATTGATATCCCTGGGAGCCCTGCCC TTTTCTGAAGAGACTTGTAGAGGTGGATGGTGAAGGGGGATGTGGAGCGG AGGGTCTTTTATAACTCCCCTAGGATTATCTGCCCCTTACTATCTTTCTT CTTTTTTGTGCCCCCCCCATCCCCTCTTTCCTTTTTCGTTCCTATTTGCT GACTCTCTCTATTCCTCCTATTCTTCATCCTTTTTCGTCCGCTTTATCCC CCCACCCTTTGTCCTTCTCTCTTATCCCTTTATTCCTTTATTTTTTCACC CCCTCCTTTTTTCCCCTTTTTTTCCCGCCCTCCTACTTTTCCCCTTCCCC CCTGTGCTAATATTTTTAACCCTTTTAATCTCCCTTTTTACCCTTTTTTC CCATTTATACGCCCCCTCTCTCTCAATTCATATTACACCTCTTTCTCTCT ATTTTTTCTATATTTAGTCTCCCCCGCACCTTTTTCCCCCACCTTTTCCT ATTCTTCTTCTAGTCTCTGTCTTTGTATATCN
quality values	Open. Hide. 6 6 6 6 15 21 59 43 30 30 28 24 14 19 10 10 10 19 18 41 41 48 30 28 26 19 19 10 18 12 12 9 9 9 11 15 15 17 16 24 24 24 28 41 57 57 36 36 36 37 37 37 29 23 13 16 18 11 11 8 8 8 15 19 37 48 42 48 48 48 54 68 68 68 68 68 68 53 59 57 57 57 57 59 68 68 68 68 68 68 50 50 50 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 57 57 54 57 57 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 43 43 43 62 52 62 62 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 57 57 57 59 59 59 68 68 68 68 59 59 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 68 68 68 68 68 68 59 59 59 59 59 68 68 68 57 57 57 57 57 59 68 68 68 59 59 68 68 59 59 59 68 68 68 68 68 59 59 59 59 57 57 57 57 57 57 59 59 59 68 68 68 68 54 54 54 48 57 48 48 48 50 48 54 54 54 57 57 57 57 48 48 48 48 48 57 59 59 59 59 59 59 59 59 48 48 48 57 57 48 48 48 48 47 59 59 59 41 41 41 32 37 40 36 32 39 36 36 36 40 41 59 48 48 48 48 48 39 43 39 48 48 47 47 35 35 35 34 34 23 23 23 28 28 41 43 43 39 38 32 31 39 37 41 34 36 28 24 24 30 30 31 31 37 39 37 32 39 36 36 32 36 23 20 20 36 32 32 32 43 35 36 32 22 8 8 8 8 10 11 15 18 18 20 20 34 20 13 9 10 9 11 11 20 28 22 19 18 18 22 22 37 37 36 39 24 22 22 22 18 10 10 9 10 9 9 12 20 15 19 14 11 11 14 9 9 9 9 9 19 19 24 26 12 15 11 9 9 9 9 14 14 19 23 19 10 11 11 15 15 14 14 10 10 10 11 11 23 11 13 13 13 23 18 15 8 8 8 8 8 8 9 17 13 13 12 17 17 16 12 11 8 8 9 9 9 10 11 12 16 10 10 10 10 9 9 10 13 12 8 8 8 8 8 8 8 8 7 7 7 8 6 8 6 6 8 12 15 10 6 6 6 6 7 6 8 8 8 8 8 8 8 8 11 15 9 9 9 9 9	Open. Hide. 10 10 10 10 9 9 15 15 12 20 20 26 34 39 37 37 39 39 39 41 42 59 59 59 59 27 23 15 13 8 8 8 7 8 8 8 9 10 10 19 21 37 36 37 37 41 47 47 37 37 37 37 42 25 23 8 8 6 6 6 6 6 8 21 23 39 36 21 24 28 29 36 36 50 50 50 59 57 57 57 43 47 47 47 47 47 53 57 59 59 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 50 48 41 41 41 48 57 68 57 57 57 48 48 48 57 59 57 59 57 57 57 57 57 57 57 57 57 57 54 57 57 68 68 68 57 57 50 50 50 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 54 54 54 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 48 48 48 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 59 59 59 48 59 59 59 59 59 59 59 59 59 59 59 30 29 12 8 8 8 8 8 8 7 7 8 11 24 28 36 40 40 40 48 48 36 47 50 53 57 57 59 59 48 48 43 43 43 50 59 57 57 57 39 28 21 12 19 12 12 10 10 10 10 18 11 8 8 8 8 8 11 10 10 9 9 9 9 6 6 8 8 8 8 11 11 11 22 16 21 12 12 12 8 8 6 6 8 8 10 10 9 10 10 13 10 8 8 18 15 10 8 11 12 14 12 14 14 14 9 8 8 8 8 8 8 8 8 8 13 8 8 8 8 10 10 10 8 8 8 8 8 7 8 8 9 9 9 9 8 8 8 10 10 11 11 11 11 11 15 23 13 13 10 10 14 10 10 10 9 11 11 6 10 6 6 6 13 10 10 8 6 6 8 8 8 9 10 10 10 10 8 8 8 8 11 11 10 9 9 8 13 13 14 28 24 18 10 10 10 10 13 10 12 13 8 8 8 8 6 6 8 8 8 8 8 12 18 16 10 10 10 10 10 11 10 8 8 8 8 8 8 8 6 8 6 6 8 10 10 10 10 10 11 10 11 10 7 8 9 9 8 10 15 10 10 8 8 8 15 17 30 19 19 14 14 10 11 13 10 8 8 8 8 10 10 13 17 15 14 14 14 15 15 16 19 16 10 10 11 11 11 18 24 16 21 11 13 10 10 8 8 8 8 10 9 9 9 9 9 13 10 8 8 8 8 10 8 10 8 8 12 12 12 11 11 15 12 14 12 17 8 8 8 8 8 8 8 12 11 12 9 9 10 10 10 8 8 8 8 8 8 10 8 8 6 6 8 12 21 28 28 17 13 13 10 9 9 8 8 8 8 8 8 10 15 22 19 15 11 8 7 7 6 8 8 9 8 8 6 9 9 10 10 10 8 11 9 9 12 16 10 8 8 8 6 6 8 8 12 9 9 9 8 8 8 8 8 10 11 6 6 6 6 6 8 10 22 16 10 13 13 20 7 7 6 6 6 8 10 15 10 13 13 9 8 8 8 8 6 6 8 10 10 8 8 8 8 9 10 8 8 8 8 8 8 10 12 10 9 9 10 8 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no336_m07.b1 MSMg01no336_m07.b1 CHROMAT_FILE:
MSMg01no336_m07.b1 PHD_FILE: MSMg01no336_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:55 2005
         (543 letters)



>mm_chr16_44180414_44181356
          Length = 943

 Score = 1019 bits (527), Expect = 0.0
 Identities = 536/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagccatttctgtttgtttgtttgtttttggctttttgagacaggatttctttgt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaattcagccatttttgtttgtttgtttgtttttggctttttgagacaggatttctttgt 546

                                                                       
Query: 65  gtagccttggctgttctggaacttggtctatagacaaggctgccctcgaactccctagtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtagccttggctgttctggaacttggtctatagacaaggctgccctcgaactccctagtg 486

                                                                       
Query: 125 atgggattaaaggcatgtgtcaccacactgcaaatccaaccaaaaatattgggagaactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atgggattaaaggcatgtgtcaccacactgcaaatccaaccaaaaatattgggagaactt 426

                                                                       
Query: 185 tttagctaccctgagtatttacacatgctttccccttgtgacactttctaaagtacatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttagctaccctgagtatttacacatgctttccccttgtgacactttctaaagtacatat 366

                                                                       
Query: 245 agtatgggcctctgtggtactgtgcatgatctcagcacttgagacactcaggcaggagca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agtatgggcctctgtggtactgtgcatgatctcagcacttgagacactcaggcaggagca 306

                                                                       
Query: 305 taaaaatgtgaggatagtctgggctatatagtacaatcttgctcacaaaataaaacctca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 taaaaatgtgaggatagtctgggctatatagtacaatcttgctcacaaaataaaacctca 246

                                                                       
Query: 365 aaagcactacagtattaacagatgtatccatgcactgcatagtgatgtttacttcctcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 245 aaagcactacagtattaacagatgtatccatgcactgcatagtgatgtttacttcctcac 186

                                                                       
Query: 425 agcctacaagtccaacagggctcccctaacactgtaaaggagttgaagagtcctattact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agcctacaagtccaacagggctcccctaacactgtaaaggagttgaagagtcctattact 126

                                                                      
Query: 485 tcatatgtactgtgccttttctttctttctttctttctttctttctttctttctttctt 543
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tcatatgtactgtgccctttctttctttctttctttctttctttctttctttctttctt 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information