BAC Information

Click to search

BAC

Clone NameMSMg01-338M07
Chromosome16 (Build37)
Map Location 14,209,510 - 14,210,019
singlet/doubletsinglet
Overlap geneMyh11
Upstream geneGt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1
Downstream gene0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338M07.T7 (MSMg01no338_m07.b1)MSMg01-338M07.TJ (MSMg01no338_m07.g1)
ACCAG453218AG453219
length702746
length of high quality
(start - end)
531 (43 - 573)510 (67 - 576)
definitionCHROMAT_FILE: MSMg01no338_m07.b1 PHD_FILE: MSMg01no338_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:28 2005CHROMAT_FILE: MSMg01no338_m07.g1 PHD_FILE: MSMg01no338_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATAGTGCGNAAATCCGCGGAATTCTGCACTATTTCATCTGGTCCT
GGGCTTTTTTTTTTTTTTTTTTTTGGTCGGAAGACTTCTAATGACTGCTT
CTATTTCTTTAGGGGTTATGGGACTGTTAAGATGGTTTATCTGATCCTGA
TTTAACTTTGGTATTTGTTATCTGTCTAGAAAATTGTTTGTTTTATCCAG
ATTTTCCAGTTGTGTTGAGTACAGGCTTCTGTAGTAGGATCTAATGGTGT
TTTGAATTTCTTTAGTTTCTGTTGTTATGTCTCCCTTTTCCTTTTTTATT
TTGCTAATTTGGATACTGTCTCTGTAGCCTCTGGTTAGTCTGGCTAAGGG
TTTATTTATCTTGTTGATTTTCTCAAAGAACCAGCTCCTGGTTTGGTTGA
TTACTTGTATAGTTCTTTTTGTTTCTACTTGGTTGATTTCAGCCCTGAGT
TTGATTATTTCTTGCTGTGTACTCCTCTTGGGTGTATTTGCTTCTATTTG
TTCTAGAGCTTTCAGGTGTACTGTTAAGCTGCTAGTGTATGCTCTCTCTA
GTTTCTTTTTGGAGGCACTCAGAGCTCTGAGTTTTCCTCTTAGCACTGCT
TTCATTGTGTCCCATAAATTTGGGTATGTTGTATCCTCGTTTTCATTTAA
TTCCAAAAAAGCCTTTANTTTCTTCCTTATTTCTTCCTTGACCAAGGTAT
CT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGATTTTTCCTGGAAATGTCCTAAAATTTGGTAA
CCTATACAGAACAGGCCTCAGGGACATGGATATGTTTTGATTTGATTCCT
ATAGTTTAGAAACTAGAATTTCAAGAGTCCTGCATATGTTCTATGCACCC
CTCCTCCCTTCCCTTGGACTGGGAGTGGGGCAGGGAGAGGAGACAAGCCC
ACCCCCTCTCTACTTCCCTTGACAGGCCAAGGCAAACCTGGACAAAAGCA
AGCAGACACTGGATAATGAGAACGCGGACCTGGCTGGGGAGCTGCGTGTC
CTGGGCCAGGCGAAGCAGGAGGTGGAACACAAGAAGAAGAAGCTGGAGGT
GCAGCTGCAGGATCTGCAGTCCAAGTGCAGTGATGGGGAGCGTGCCCGGG
CTGAGCTCAGTGACAAGGTCCACAAGCTACAGGTGAGGGCAGGCAGCACG
ACCAAGCTGCTGCTCTCTAGCTGCCTGAAAGCTGGCTCCTCGGGATGCAT
CCTTGTATTCCCGTGTCAATTCTTCTTGTCAAAACCTCCTGCATATACTT
AATGAACATGTATTGAGCACCTACTGTATACCAGAGACTGTGCTTCATCC
TTAGACCAAAGATCCAGGGACATTACCGATTATCTCTGTTATCATTGGGA
GAGCTGGTTCCAAACTCCACGAGAAATTTAGGAGACCCCCTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_m07.g1 MSMg01no338_m07.g1 CHROMAT_FILE:
MSMg01no338_m07.g1 PHD_FILE: MSMg01no338_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:28 2005
         (510 letters)



>mm_chr16_14209310_14210219
          Length = 910

 Score =  963 bits (498), Expect = 0.0
 Identities = 507/510 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatttttcctggaaatgtcctaaaatttggtaacctatacagaacaggcctcagggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 agatttttcctggaaatgtcctaaaatttggtaacctatacagaacaggcctcagggaca 651

                                                                       
Query: 61  tggatatgttttgatttgattcctatagtttagaaactagaatttcaagagtcctgcata 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 650 tggatatgttttgatttgattcctatagttcagaaactagaatttcaagagtcctgcata 591

                                                                       
Query: 121 tgttctatgcacccctcctcccttcccttggactgggagtggggcagggagaggagacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgttctatgcacccctcctcccttcccttggactgggagtggggcagggagaggagacaa 531

                                                                       
Query: 181 gcccaccccctctctacttcccttgacaggccaaggcaaacctggacaaaagcaagcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gcccaccccctctctacttcccttgacaggccaaggcaaacctggacaaaagcaagcaga 471

                                                                       
Query: 241 cactggataatgagaacgcggacctggctggggagctgcgtgtcctgggccaggcgaagc 300
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cactggagaaggagaacgcggacctggctggggagctgcgtgtcctgggccaggcgaagc 411

                                                                       
Query: 301 aggaggtggaacacaagaagaagaagctggaggtgcagctgcaggatctgcagtccaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aggaggtggaacacaagaagaagaagctggaggtgcagctgcaggatctgcagtccaagt 351

                                                                       
Query: 361 gcagtgatggggagcgtgcccgggctgagctcagtgacaaggtccacaagctacaggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gcagtgatggggagcgtgcccgggctgagctcagtgacaaggtccacaagctacaggtga 291

                                                                       
Query: 421 gggcaggcagcacgaccaagctgctgctctctagctgcctgaaagctggctcctcgggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gggcaggcagcacgaccaagctgctgctctctagctgcctgaaagctggctcctcgggat 231

                                         
Query: 481 gcatccttgtattcccgtgtcaattcttct 510
           ||||||||||||||||||||||||||||||
Sbjct: 230 gcatccttgtattcccgtgtcaattcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)