Query= MSMg01no339_l18.b1 MSMg01no339_l18.b1 CHROMAT_FILE:
MSMg01no339_l18.b1 PHD_FILE: MSMg01no339_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:38 2005
(647 letters)
>mm_chr16_39900763_39901809
Length = 1047
Score = 1127 bits (583), Expect = 0.0
Identities = 628/643 (97%), Gaps = 1/643 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaacatctccaaatcatagaaactctccacacctggaaaaaacatgcttcttt 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 gaattccaaacatcacaaaatcatagaaactctccacacctggaaaaaacatgcttcttt 984
Query: 65 taaaacatgagtcaaaacatgatcagctgctgcagacagtcagaattagtctcttacccc 124
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 983 taaaacatgagtcaaaacatgatcagctgctgcagacagtcggaatttgtctcttacccc 924
Query: 125 cacccctggaattaaaacaagaccatatacttataatagtgctgtatcttctacagaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 cacccctggaattaaaacaagaccatatacttataatagtgctgtatcttctacagaaac 864
Query: 185 caaaattccagaatttttttttctacttatcaagcttttcttttcctcactcagaaactg 244
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 863 caaaattccagaa-ttttttttctacttatcaagcttttcttttcctcactcagaaacag 805
Query: 245 atatgaagcctaaggttcttaaagacctcaaaaagtgaactctggtaagataataaagca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atatgaagcctaaggttcttaaagacctcaaaaagtgaactctggtaagataataaagca 745
Query: 305 tataaagttcaaattacaaaatgcacagatattacacatatatattcacattagaaggaa 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 744 tataaagttcaaattacaaaatgcacagatattacacatatatattcacattagaaggga 685
Query: 365 taaggagacaagactgtctttgtgtgtgattgtacatatatgagccagcatgaattattg 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaggagacaagattgtctttgtgtgtgattgtacatatatgagccagcatgaattattg 625
Query: 425 gttataataggtatgcaagaaaaatgtttaacattctacattccattctctcttggtatt 484
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 624 gttataataggtatgcaagaaaaatgtttaacattccacattccattctctcttggtatt 565
Query: 485 ctaagaaataatcacaatgttcatcagaacaacgtgactttataatttaaatttcttttg 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 564 ctaagaaataatcacaatgttcatcagaacaacgtgattttataatttaaatttcttttg 505
Query: 545 cccagaactttaatgaaaatatgttctaatgggtttaagggccaaattaaaagtgttctt 604
|||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 504 cccagaactttaataaaaatacattctaatgggtttaggggccaaattaaaagtgttctt 445
Query: 605 ctagtgttcagcaatgaatctccatgcaagcatcttctgattc 647
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 ctagtgttcagcaatgaatctccatgcaatcatcttctgattc 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_l18.g1 MSMg01no339_l18.g1 CHROMAT_FILE:
MSMg01no339_l18.g1 PHD_FILE: MSMg01no339_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:38 2005
(548 letters)
>mm_chr16_39738768_39739715
Length = 948
Score = 1013 bits (524), Expect = 0.0
Identities = 545/558 (97%), Gaps = 10/558 (1%)
Strand = Plus / Plus
Query: 1 atttgaatttgctgaacggtgcaatctatgctgtgattttaattttgagcaaaataagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atttgaatttgctgaacggtgcaatctatgctgtgattttaattttgagcaaaataagta 250
Query: 61 aagaataaagaataagctttactttacttgtgatatgtgcttctatgcgttagagttatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagaataaagaataagctttactttacttgtgatatgtgcttctatgcgttagagttatc 310
Query: 121 aaaaagtttaacttcttgtaagtctctcaaattaaaattcatgtagacaaaggattccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaaaagtttaacttcttgtaagtctctcaaattaaaattcatgtagacaaaggattccaa 370
Query: 181 aaaggacactagactttcttaaggatatttgtactgaaggacaaaaaaactcagcagagt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 371 aaaggacactagactttcttaaggatatttgtactgaaggacaaaagaactcagcagagt 430
Query: 241 ggatatgtattgattttattttcaaatctatttgctcttattttggcaataaaaattttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggatatgtattgattttattttcaaatctatttgctcttattttggcaataaaaattttt 490
Query: 301 ccctaaatgagacacaatgccctgacattgcaataccaaatgtttaatagtaacaatagc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccctaaatgagacacaatgcgctgacattgcaataccaaatgtttaatagtaacaatagc 550
Query: 361 taatactgagtctacattgtgtatcacacttcattttgtct----------aagacttaa 410
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 551 taatactgagtctacattgtgtatcacacttcattttgtcttagtcttcataagacttaa 610
Query: 411 gttccatcaaaactagaattttgtgggtatgacaagtgtgacaaggagagtttaggtcat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gttccatcaaaactagaattttgtgggtatgacaagtgtgacaaggagagtttaggtcat 670
Query: 471 tttcttaacatcacagaaagatgattgtacagatgggatttgtcttagcccagttgatgg 530
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 671 tttcttaacatcacagaaagatgattgtacagatgggatttgtcttagctcagttgatgg 730
Query: 531 ttccaggtaaaacagatt 548
||||||||||||||||||
Sbjct: 731 ttccaggtaaaacagatt 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
