NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTAACGTTCTCAATCATTTCCCAGGTCCAGAACTAGATGACT
TGTTGGTAAATTCCTCTTCTTCATTTATCCCAACTTGGCGTTCTTTCATA
GGCAGGACATGATAACTCCCTCGTTTGTGTTTTCACCTTTTTATTGCTTC
TGTAATCGTTGGATTCTTTTTTATATCAAGAACACCAATATCTTAATATT
AATTAATATTAATTAATTTTTATAAATAAATTAATTAATTAATAAAAATT
AATTTCTACTTTTCTTTTTATAATATTGCACAGGACTTGTTTGCTTTGGA
TCTGGAACTCTACAGGTACAGTGGTGTAAATATGACTGGATTTCGGTTGC
TGAATATTGACAACCCTCACGTGTCATCCATCATTGAGAAGTGGTCCATG
GAGAGATTGCAGGCCCCACCCAGACCTGAGACTGGTCTCCTGGACGGCGT
GATGACAGTGAGTAGTTTGATTCTTCAAATATGGTTTTATTTATTGTTTG
AGAATTTCATGTAAGTATGCAATGTTTTTTTTATCAAATTCCAGACACTG
TCTGCCTCCTCCTCCACCAGACTCCCTCTGCCTTCCTCTCTTACTGGAGG
AGGATGGCAATGTGGGCAGAAAGATTGTAAGAGACAGTGAATAGTTTTAA
TGAAATCTCACGATCATGCTTTACGCTATAGAAG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCGACACACTATTGGCTTA
TTCAAACATCAGCAGAAAATTACATGTACGTGCAGGGTGTCAGAGTTCTG
TGAGTTGTTGACTCAGTTCAGATAGCCCTGTTATGTCCTCACATTCCTCT
TTATCTTTAAGGTTAAGCTGTTCCCAGGAATGTTTTAACTACAGGGCATA
CCCGGGTTTGTTTTTCTTTATTCTCAGCCCCAGGCAGCCTCTAGGCTCAC
AAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAAAT
TTCATCTTTCTTTCAGTGTTTCCATGTTCAGTTAAACTTTCTTGTCTTGT
TAAGGATTCCATTGCTGTGAAGAGACAACATAACCACCGCAACTCTTATA
AAAGAAAGCATTGAATTGAGGCTGGCTTACAGTTCAGAGGTTCAGACCAT
TGTCATCATGTTGGGGAAGCATGGGAACATGCAGGCGGACATGGAGCTGG
GGAGTAGCTGAGTGTTCTACATCGGGATCAGCAGGCAACAGGGACAGTAA
GAGGTAACCCTGGGCCTGGCTTGAACATTTGAAAACCCAAAGCACATCCT
TAATGATTAACTTCCTCCAATGAGGCCACACCCACACCACCAAGCCATGG
TGTCACTTCTTAGAAGCTATGGGAGCCATTTTCATTGAAA

Query= MSMg01no340_l02.b1 MSMg01no340_l02.b1 CHROMAT_FILE:
MSMg01no340_l02.b1 PHD_FILE: MSMg01no340_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:45 2005
         (593 letters)



>mm_chr16_88006004_88006996
          Length = 993

 Score =  984 bits (509), Expect = 0.0
 Identities = 530/541 (97%), Gaps = 8/541 (1%)
 Strand = Plus / Minus

                                                                       
Query: 57  ggtaaattcctcttcttcatttatcccaacttggcgttctttcataggcaggacatgata 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 ggtaaattcctcttcttcatttatcccaacttggcgttctttcataggcaggacatgata 934

                                                                       
Query: 117 actccctcgtttgtgttttcacctttttattgcttctgtaatcgttggattcttttttat 176
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 actccctcatttgtgttttcacctttttattgcttctgtaatcgttggattcttttttat 874

                                                                       
Query: 177 atcaagaacaccaatatcttaatattaattaat----attaattaatttttataaataaa 232
           |||||||||||||||||||||||||||||||||    ||||||||||||||    |||||
Sbjct: 873 atcaagaacaccaatatcttaatattaattaatatcaattaattaattttt----ataaa 818

                                                                       
Query: 233 ttaattaattaataaaaattaatttctacttttctttttataatattgcacaggacttgt 292
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 817 ttaattaattaataaaaattaatttctacttttcttttcataatattgcacaggacttgt 758

                                                                       
Query: 293 ttgctttggatctggaactctacaggtacagtggtgtaaatatgactggatttcggttgc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ttgctttggatctggaactctacaggtacagtggtgtaaatatgactggatttcggttgc 698

                                                                       
Query: 353 tgaatattgacaaccctcacgtgtcatccatcattgagaagtggtccatggagagattgc 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgaatattgacaaccctcacgtgtcatccatcattgagaagtggtccatggagagattgc 638

                                                                       
Query: 413 aggccccacccagacctgagactggtctcctggacggcgtgatgacagtgagtagtttga 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aggccccacccagacctgagactggtctcctggacggcgtgatgacagtgagtagtttga 578

                                                                       
Query: 473 ttcttcaaatatggttttatttattgtttgagaatttcatgtaagtatgcaatgtttttt 532
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttcttcaaatatgattttatttattgtttgagaatttcatgtaagtatgcaatgtttttt 518

                                                                       
Query: 533 ttatcaaattccagacactgtctgcctcctcctccaccagactccctctgccttcctctc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttatcaaattccagacactgtctgcctcctcctccaccagactccctctgccttcctctc 458

            
Query: 593 t 593
           |
Sbjct: 457 t 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)