BAC Information

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BAC

Clone NameMSMg01-341D22
Chromosome16 (Build37)
Map Location 12,692,666 - 12,897,452
singlet/doubletdoublet
Overlap geneEG622509
Upstream gene4933437K13Rik, C530044N13Rik, 2700045P11Rik
Downstream geneLOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341D22.T7 (MSMg01no341_d22.b1)MSMg01-341D22.TJ (MSMg01no341_d22.g1)
ACCAG455088AG455089
length833800
length of high quality
(start - end)		204 (69 - 272)330 (71 - 400)
definitionCHROMAT_FILE: MSMg01no341_d22.b1 PHD_FILE: MSMg01no341_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:26 2005CHROMAT_FILE: MSMg01no341_d22.g1 PHD_FILE: MSMg01no341_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,692,666 - 12,692,869)(12,897,123 - 12,897,452)
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAATAATATCACAAAAATACATTCCCATATGTCAGTGTGATAGA
TTTTTCTGGAAAGATGTTTGGCTGGAATTTCATCTGAACTCAAAGCTCCT
TTGAGACCACTAAGGAGGGCTCAGCCTAGTGATGCACAGGATATTTGAGA
GTCGCAGTTAAATGATGATTAAAAGGCACCCCTGTTAAAGCAGGCTTATA
AGATTAATGTGGGGATGAGGGGGGGCTGGATATGACATTTTTCTCTGCCC
TTTCCCCCTTTTTTTCCCCCTTTTCCTTTTCCTCTTCCTTCTCCTCTTTT
CTTTCTTTTCTCCTTTCCTCTCCCCATTTTCCCCACCCTTAACTTCCCTA
CTCCCCTTTCCCTTTTCCCCCCCCCCCAGTCTTTCTCTATTTTTTTCCCA
TTCTCCTCCTTTCCCCCGTTTCCCCTCCCATCTACTTTTTCCTCCCCCCT
TTCTCCTTTACCTTTCCTTCCTCCTTTCTCTCTTCCCCCCTTCCCCTTTT
CCTTTCTTCCCCCCCCTCCCTTTTTTCCCCCCCCTTTCTTCTTTTTTTCC
TCCCCCTTGCTATCCCCCTTTCCCTTTTCTCTTCATTACCTTTTATTCCC
CCGCCCTCCTTTCCCCTTTTCCATTCCCCTTTTTTCCCCCCTCCCTTTTC
CTTCTTTTTTCTTTCCCCCGCTTTTCCCCCTTTTTTATTTTCCCTTTCCT
TCCCACTCTTTCTTATTTTTTCCCTTGTTTTTTTTCCCTTTTTTTTTATT
TCTTCCCCTCTTTATTCTCGCCTTCTTTCACCN

TGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGGTGTGACTTTTTCTACCACACGTTTC
TTCTTACATAATTAAAGCTTGAGTTGAACACATTGTAATTTCCAAGGGCA
GGAGAACCATAGTGGAAGAGAAAGAACCTTTATTCCTGCTGGGGTCAGGA
TGGAGAGGAGGCAAGGATGAAGGAAGAGCTGCTTACCAGGGCAGAAACAA
AGCTTGTGCTTTGCTCAGAGCTGCTGACCTCCACTGCTTTGGAGGATGTG
GGGAGTGACCTTGGGCAAGCTACTTAACTCCTCTGTCCCCAACTGTCCTC
TTGGCAAAGCAGAGATACCAACTCCTTCATCTCAGTGTTACTGGTGGATG
AAGCGATGACAGCTATAAACTTTTGTCATAGTACTTGATAGTAAATTCTC
CGTCTGTTCCTTTTCTTTCAAGCTGGTCCGCGAAAGGTAAAAAGTCTTCA
GCCTTCAAACCCCCTTCTCCCGGGATATTAACTATTGACAACTACCCTTT
TTTCTTTTTCCCCTTGTAACTCTCGTAGTCATTGCCCTTCATCGCGCTTT
TTCCTTTCCCTCGTTCCCTTTTCCCTTTTTCCCCCTTATTTTTCTTTCCC
CCTCCCTTTTCTCCTCTTTTTCTTCCCCCTTTTTTCTCTCCTCCTTTCCC
CCTTTTCCTCCTTTTCCATTTTCTTTTCTCTTCCACATTTTTTCCCACTC
CGTCTTTTTCGCCCTTTCATTCCCGCTGATGCCCTTATATCCCTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_d22.b1 MSMg01no341_d22.b1 CHROMAT_FILE:
MSMg01no341_d22.b1 PHD_FILE: MSMg01no341_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:26 2005
         (204 letters)



>mm_chr16_12692466_12693069
          Length = 604

 Score =  395 bits (204), Expect = e-114
 Identities = 204/204 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaatacattcccatatgtcagtgtgatagatttttctggaaagatgtttggctggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaatacattcccatatgtcagtgtgatagatttttctggaaagatgtttggctggaat 260

                                                                       
Query: 61  ttcatctgaactcaaagctcctttgagaccactaaggagggctcagcctagtgatgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatctgaactcaaagctcctttgagaccactaaggagggctcagcctagtgatgcaca 320

                                                                       
Query: 121 ggatatttgagagtcgcagttaaatgatgattaaaaggcacccctgttaaagcaggctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatatttgagagtcgcagttaaatgatgattaaaaggcacccctgttaaagcaggctta 380

                                   
Query: 181 taagattaatgtggggatgagggg 204
           ||||||||||||||||||||||||
Sbjct: 381 taagattaatgtggggatgagggg 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no341_d22.g1 MSMg01no341_d22.g1 CHROMAT_FILE:
MSMg01no341_d22.g1 PHD_FILE: MSMg01no341_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:26 2005
         (330 letters)



>mm_chr16_12897019_12897748
          Length = 730

 Score =  623 bits (322), Expect = 0.0
 Identities = 328/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggtgtgactttttctaccacacgtttcttcttacataattaaagcttgagttgaaca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcaggtgtgactttttccaccacacgtttcttcttacataattaaagcttgagttgaaca 375

                                                                       
Query: 61  cattgtaatttccaagggcaggagaaccatagtggaagagaaagaacctttattcctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cattgtaatttccaagggcaggagaaccatagtggaagagaaagaacctttattcctgct 315

                                                                       
Query: 121 ggggtcaggatggagaggaggcaaggatgaaggaagagctgcttaccagggcagaaacaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 314 ggggtcaggatggagaggaggcaaggatgaaggaagagctgcttactagggcagaaacaa 255

                                                                       
Query: 181 agcttgtgctttgctcagagctgctgacctccactgctttggaggatgtggggagtgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agcttgtgctttgctcagagctgctgacctccactgctttggaggatgtggggagtgacc 195

                                                                       
Query: 241 ttgggcaagctacttaactcctctgtccccaactgtcctcttggcaaagcagagatacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttgggcaagctacttaactcctctgtccccaactgtcctcttggcaaagcagagatacca 135

                                         
Query: 301 actccttcatctcagtgttactggtggatg 330
           ||||||||||||||||||||||||||||||
Sbjct: 134 actccttcatctcagtgttactggtggatg 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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