BAC Information

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BAC

Clone NameMSMg01-342K05
Chromosome16 (Build37)
Map Location 39,774,131 - 39,774,487
singlet/doubletsinglet
Overlap genenone
Upstream geneUpk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342K05.T7 (MSMg01no342_k05.b1)MSMg01-342K05.TJ (MSMg01no342_k05.g1)
ACCAG456141AG456142
length739755
length of high quality
(start - end)
357 (58 - 414)343 (62 - 404)
definitionCHROMAT_FILE: MSMg01no342_k05.b1 PHD_FILE: MSMg01no342_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:12 2005CHROMAT_FILE: MSMg01no342_k05.g1 PHD_FILE: MSMg01no342_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTATACGACTCACTANATCCAGAAGAGGCGCGGAATTCTTATAGTTA
CATTGTATCCTTGAATGTCTGGTTGTATCAACTCTCTTCTAGAAACACCC
TTGTCCATCTCTGTACCACATGGAAGAGTGTTCTTTTCTGGAAAAAAGTG
TGATGTGGCTGGCATAGCAGTGTCTGAAGCAGTTATAAGCACATTTGAAT
TTTTTAAAAATATCTTTGCTAATGGTGATAGTGAAGAAATGCTGAAAAAA
ATTAGAATTTCAAAATGAATGTCAGGCATACACCTTTTGTCCTAGCACTC
AGGATGTATAGGTAATTCGATGTCTGAGTCAAGGCCAGCCTGGAAGACAT
TGTGATTTTTTTTCAGGCCTGGCAGGGCTACACAAAGAAGCCTATCTTGA
AAAACAAACAAATAAACACAGAAATAATTTCCAAATGAGCTTACTTCATT
TACACAATAGGGAAAAAAACCCCTCAATTTTGTAAAGCTCGAGGCTTAAT
GAACATTTTTTCCAATGTCTTACTCTCCCTTATCGGAATCTTTCCCTGAT
GTACACCTTGTCCCGTTTACCCCCAACATCGCCTCTTTTCTTTCTCCTTT
TTTCTTCCCCTTATTCCTTCCTATATCTCCCAAAACTCCCCCTTTTTTTC
CTCCTTTCCTCTCCCCCCTTTTTACCCCACACTCCTTTTTCTTTCCTTTC
TCTCCTCCCCCTCCTCTTTTATCTACTCACCCCTCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATGAGTCCCTCCCCTATCCATGCTAGGATTTAGGATGGC
TTGCTCTTGTGCAAATTTTGCACAGGTAATCATGGTTGCTATGAGTGCAT
GGCAACAAGTCCTCTGTCGTGTCAAGCAGATAGTGCTTTGCTAAAGATGT
CTACCACCTTTAGAGTTCACACAGTCTCTCTCTACTATGATGATAATTGA
ACCTTGGAAAAGGACTATAATATAGATATCTCACTTAGAGCTGAACATTA
TGTAGTCTTTTATTCTTGGCATATTGAACAGTTATGAATTTTTGTGTTAA
TCACCATCTACTTAAACAATTTGGGGTGTAGGTTGAATACTGCACTAATC
TACAGGCATAATAATAAGGACTTTGGCGCGCATTTATTGATTTCTCTATT
TAGCAGAATAATAGCAACAGGTTACCACCCTAAGAAGTATAATCTATCCT
GTGCCTTTCTCGATTAGTGCTACTTTTCCTAAAATGATTATTCCCAACTC
CATTCTATTTCCCTGTTTCATTTACTACCTCATCACATTTTCTCTAACCA
TCGAATCAAAATTTCTCTTTTGTCATCTGACCCCCTCCTTTTTCTTTTTT
CCCCTTTCACTGTTCACCCCCTCTATCTTCCTCTTCTTTTTCTTTCCTCC
CCGTTCCATCTTTTTCTTATCCTCTCCCCCCCCTTATCTTTTTTTTTTCC
CGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_k05.b1 MSMg01no342_k05.b1 CHROMAT_FILE:
MSMg01no342_k05.b1 PHD_FILE: MSMg01no342_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:12 2005
         (357 letters)



>mm_chr16_39773931_39774687
          Length = 757

 Score =  629 bits (325), Expect = 0.0
 Identities = 349/357 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttgaatgtctggttgtatcaactctcttctagaaacacccttgtccatctctgtacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttgaatgtctggttgtatcaactctcttctagaaacacccttgtccatctctgtacc 260

                                                                       
Query: 61  acatggaagagtgttcttttctggaaaaaagtgtgatgtggctggcatagcagtgtctga 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 acatggaagagtgttcttttctgggaaaaagtgtgatgtggctggcatagcagtgtctga 320

                                                                       
Query: 121 agcagttataagcacatttgaattttttaaaaatatctttgctaatggtgatagtgaaga 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 agcagttataagcacatttgaattttttaaaaatatctttactaatggtgatagtgaaga 380

                                                                       
Query: 181 aatgctgaaaaaaattagaatttcaaaatgaatgtcaggcatacaccttttgtcctagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgctgaaaaaaattagaatttcaaaatgaatgtcaggcatacaccttttgtcctagca 440

                                                                       
Query: 241 ctcaggatgtataggtaattcgatgtctgagtcaaggccagcctggaagacattgtgatt 300
           ||||||| | | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaggaggcagaggtaattagatgtctgagtcaaggccagcctggaagacattgtgatt 500

                                                                    
Query: 301 ttttttcaggcctggcagggctacacaaagaagcctatcttgaaaaacaaacaaata 357
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 501 ttttttcaggcctggcagggctacacaaagaaacctatcttgaaaaacaaacgaata 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)