BAC Information

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BAC

Clone NameMSMg01-342O06
Chromosome16 (Build37)
Map Location 12,796,421 - 12,796,674
singlet/doubletsinglet
Overlap genenone
Upstream geneC530044N13Rik, 2700045P11Rik, EG622509
Downstream geneLOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342O06.T7 (MSMg01no342_o06.b1)MSMg01-342O06.TJ (MSMg01no342_o06.g1)
ACCAG456334AG456335
length726668
length of high quality
(start - end)
239 (62 - 300)---
definitionCHROMAT_FILE: MSMg01no342_o06.b1 PHD_FILE: MSMg01no342_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:32 2005CHROMAT_FILE: MSMg01no342_o06.g1 PHD_FILE: MSMg01no342_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACTTTTTCAAGAGGAGGCGCGGAATTCCATTCTT
GCCATGAAAAATGAAGATGATTCCAGAAATTCAAGCAGAGCAAATGTTCA
CTCAGGCAAACCCTGGTACACTCTGAACCCATGCTTGGAGAAGAGGAGAC
CTGGCAGCTTTTGTTTTGTTTTGTTCTTCATTTCCACAGGATCATGAGCC
CATTGTGCACATCTTAATTACAGGAACAAGCACAACTCCCTAAATTCACC
AAGCTGCTCCAGAGATCTCAAAGGACTGCAGCCTGCATGAAGGAATAGTC
TTAGTTTCTAGTAAGGTATGAGCATATTGATTGTCGTTGCAGCTCCAGCA
CTGGTAGACTAATGTTAGGCCCCTTCACTTCCAGATCCTGGTTGCTACAC
CACGCCACCAGTTATTCGAGCTATCCATCATTTCTCCAGAATGAGCTCGG
TCGTACAGACAAGTGGATAGAGTAATGCACATGTGCAGCTTATTANAAGT
GCTTCTCATTATGCAGTCTGGAAACCTTTTACTGACATAGATTCCTGCCC
TTCTCTGCCTTTCATTTGCTAGTCCGCCCCTGAATCCTATGTACAACCAG
TCCCCCTACCTATGTTGCTTAACCACTTCTTTTTGTTATTTCTGTCCCGT
TCTATCTACACTCCTCTTATTATTTGCTCATTCAGCTCTCTTGTTCCTCA
CCCAATCCCCGCGCCTCTCTATAAGT
GTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT
ATTATTTCCCCCCGCGGGGAACTTCCTCCTTCCCTGGTAAAAAGCTCTTT
GGTTTTTTTTTATCTCCTTCTTTTTTTCTTTCCGTTTTCTCTCCCTTTTA
TTTTCTTTTCCTTCTCTTCCTCTTGGAATTATCGTTGAAAAAAATCGGGC
TGGGTTTACGGCCCCCCTTTTTTTTATGGGGTGCCCCAAAAAAGGGGGTT
TTTTTGTTGTTCCCCTCCCTTTCTTTGGGGTTTATTTGTGATTATTTAGA
AACCCGCCCCCTCCTTTGGGGCAAATCCACTCCTCTTCTTTGATAAGCAA
ACGGTGGAGTCTCTTCCGGTTTCCCCTCCTTTGGAAATGTCTGTCCCCCC
TTAAAAAAAATTTTTGGGGGGCACCCCCCCCCACTTTTTTGTGGGGGCAT
TTTTCCCCATCTCCCCCGGTAAAAGAAATTTTCCCTTTCATAAAAAAAAT
TGGTTTTTTTGGGGCGCCCCCTTCCTTGTTGTGGTTTTATTTCGCCCCCC
CTCCTTTCTCCTTTTCTCCCCCTTTATTTTTTTACCCATGCTGGTAAGTA
CATACGCCCCCCCCTCTCCCTTTTCGCCATCTCTTCACTCTTCCCCTTAT
TTTCGTTTTTCTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_o06.b1 MSMg01no342_o06.b1 CHROMAT_FILE:
MSMg01no342_o06.b1 PHD_FILE: MSMg01no342_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:32 2005
         (239 letters)



>mm_chr16_12796236_12796874
          Length = 639

 Score =  422 bits (218), Expect = e-122
 Identities = 238/254 (93%), Gaps = 15/254 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagatgattccagaaattcaagcagagcaaatgttcactcaggcaaaccctggtacac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgaagatgattccagagattcaagcagagcaaatgttcactcaggcaaaccctggtacac 245

                                                                       
Query: 61  tctgaacccatgcttggagaagaggagacctggcagcttttgttttgttttgtt------ 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 246 tctgaacccatgcttggagaagaggagacctggcagcttttgttttgttttgttttgttt 305

                                                                       
Query: 115 ---------cttcatttccacaggatcatgagcccattgtgcacatcttaattacaggaa 165
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgttttgttcttcatttccacaggatcatgagcccattgtgcacatcttaattacaggaa 365

                                                                       
Query: 166 caagcacaactccctaaattcaccaagctgctccagagatctcaaaggactgcagcctgc 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caagcacaactccctaaattcaccaagctgctccagagatctcaaaggactgcagcctgc 425

                         
Query: 226 atgaaggaatagtc 239
           ||||||||||||||
Sbjct: 426 atgaaggaatagtc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)