BAC Information

Click to search

BAC

Clone NameMSMg01-344E23
Chromosome16 (Build37)
Map Location 71,303,925 - 71,304,373
singlet/doubletsinglet
Overlap genenone
Upstream geneGbe1, D16Ertd519e, LOC100039231
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344E23.T7 (MSMg01no344_e23.b1)MSMg01-344E23.TJ (MSMg01no344_e23.g1)
ACCAG457406AG457407
length737719
length of high quality
(start - end)
448 (53 - 500)449 (74 - 522)
definitionCHROMAT_FILE: MSMg01no344_e23.b1 PHD_FILE: MSMg01no344_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:27 2005CHROMAT_FILE: MSMg01no344_e23.g1 PHD_FILE: MSMg01no344_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCATATCTCCTCAGGGTTAATGTTAGTGAATCAGAGAG
TGGATATTTTACAACATAATATGGAACGGATGATGGATGTCATACAAATG
AGTTGTGTGGCATCCACATCGCATGTGTGCATTACTCCCAATAAGTATAT
TAATAATTCTTTTATTAAAAGTACAGACCTATCGAATTACCTGAAGGGGA
ACTGGTCGCAGGAGCTGGAGAGGTTGCAGACGAGGCTGCAGATGCAGATC
CTGAACCTTAATGGGACCAGAGTGGAACCAGTGACCCTCGGAGACTTTAC
CTCTTGGTTTACCTCTGCTTTTTCTTACTTTAAGGAATGGGTGGGAGTGA
TTTTGTTTGGTGCTGCCATAAGCTGTGGACTGGTGTTCATGCTCTGGTTG
GTATGCAAATTCAGAACCCAACAAAAACGTGACAAGGTGATTATAACTCA
GGCACTTTTAGCTATTGAAAACGCTCCTCCCCTGAAATTTGGTTATCTAT
GCTCACGATTAATCTGCATGAGATTAAAATGAAAAGACTCCACCATCCTT
TGTCCAGCCCTTGGTCCTTCAAAAGGGGAACATGAATTCCCCCCCTAATT
CAATTTTTGGCGGGGCTCCTTTTGAAAAATCCCCCTATGTTTTTTTACAA
TTTTTTTTCCCCTCCCTGGGGGTATCTTAAAACGGCG
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGATCTGATTGCCTTTGTCTTCTCA
AGTTTAAGGTGTGTTCATATTCCAGGCAGCTCACACAGACTGAAAGGACT
TAAGGTGTGGTTCTCTTTTCTATTTAAGCTAAAAAATGCACACTATTTAA
CTCTTAAGTAATAGGCTTCAATTGAAACATTGAAACAATCAAGACACATT
ACCTATGTTGTCAATATACAGTATCAGTTAAAGTTGATATCTATTTTCTG
AAGTTGAAGGAATATTAAACTGAGTTCTCCATTGTAGGCTTATGGCTATG
ACAGCCACATAAGGATTTAATCTTTCTATTTGACTTTCTGGTCCCACACA
TTTTATTTGTCTTACATAAACTTGGAAATTTCCCCAGATCCTTACATTCC
TTTAGAGCCAGTCACAACAAAGGTCAGTCAGAACTGCATTGTATAGTGAG
CTACAATAAGCTTGGACCCGAAATAGTGGCCACCATCCCATAGCAGCACG
TTCTGCACTTGCGTATGAGCTTTTATGGGTTCTCTGAGCTTTCTAAATTT
TTTCTTTATAAGCTGCCCCAGAGCTCAACTGGGATTTCTCCCCACTCTCA
ATCAACCTCAGNCATAATAATAGGCCCAGGGCTATGTTGGGAACCCCCAT
TTTCAAAGGAAAATTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_e23.g1 MSMg01no344_e23.g1 CHROMAT_FILE:
MSMg01no344_e23.g1 PHD_FILE: MSMg01no344_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:27 2005
         (449 letters)



>mm_chr16_71303725_71304573
          Length = 849

 Score =  830 bits (429), Expect = 0.0
 Identities = 444/449 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatctgattgcctttgtcttctcaagtttaaggtgtgttcatattccaggcagctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagatctgattgcctttgtcttctcaagtttaaggtgtgttcatattccaggcagctca 260

                                                                       
Query: 61  cacagactgaaaggacttaaggtgtggttctcttttctatttaagctaaaaaatgcacac 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cacagactgaaaggacttaaggtgtggtcctcttttctatttaagctaaaaaatgcacac 320

                                                                       
Query: 121 tatttaactcttaagtaataggcttcaattgaaacattgaaacaatcaagacacattacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttaactcttaagtaataggcttcaattgaaacattgaaacaatcaagacacattacc 380

                                                                       
Query: 181 tatgttgtcaatatacagtatcagttaaagttgatatctattttctgaagttgaaggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgttgtcaatatacagtatcagttaaagttgatatctattttctgaagttgaaggaat 440

                                                                       
Query: 241 attaaactgagttctccattgtaggcttatggctatgacagccacataaggatttaatct 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaactgagttcttcattgtaggcttatggctatgacagccacataaggatttaatct 500

                                                                       
Query: 301 ttctatttgactttctggtcccacacattttatttgtcttacataaacttggaaatttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ttctatttgactttctggtcccacacattttatttgtcttacataaacttggaaattccc 560

                                                                       
Query: 361 ccagatccttacattcctttagagccagtcacaacaaaggtcagtcagaactgcattgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 ccagatccttacattcctttagagccagtcacaacaaaggtcagtcagaactgtattgta 620

                                        
Query: 421 tagtgagctacaataagcttggacccgaa 449
           |||||||||||||||| ||||||||||||
Sbjct: 621 tagtgagctacaataaacttggacccgaa 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)