BAC Information

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BAC

Clone NameMSMg01-344G04
Chromosome16 (Build37)
Map Location 93,549,247 - 93,549,443
singlet/doubletsinglet
Overlap genenone
Upstream geneRunx1, EG666023, LOC100040747
Downstream geneSetd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832, LOC100040857
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344G04.T7 (MSMg01no344_g04.b1)MSMg01-344G04.TJ (MSMg01no344_g04.g1)
ACCAG457463AG457464
length859797
length of high quality
(start - end)
184 (46 - 229)203 (75 - 277)
definitionCHROMAT_FILE: MSMg01no344_g04.b1 PHD_FILE: MSMg01no344_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:33 2005CHROMAT_FILE: MSMg01no344_g04.g1 PHD_FILE: MSMg01no344_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACGTTGTTTGTCTTAAATATGACACAGCCAGACTCTGTCTGGTCA
CTGGGCAGCTGGGGGGTGGGGAAGACACAGGAGACAGAGAGAGAGAGACA
TCCCATCCTGTCTCCATTGCTTGTTTTAGTTTGGTTTGGTTTGGTTTTTT
TTTGTTGTTGTTGTTTTGTTTTGTTTTGCTTTTTTTTTCCCTTTCCCTTT
TTCTTTTTTTCTTNTTTTTTTNTTTTTTTGTTTTTTTTTTTCTTTTTCTT
TTTTCCTTTCTCCCCCCATTTTTTTTTTTTCCCTTCCGTTTTCTTCTCTC
CCTATTCTTTTTTTTTTTTTACTCCTTCTCCTCGTTTTCTTTCTTTCATA
TTTCTCTATTTTTTTTTATCTTCTCTCTTCCCTCTTCATTCTATTATACC
CCCTTCTCTTTCCTTTCTCTTATCTTTTTTTCTTTTTTTATTGTGTTTAC
TCTCTTCATTTTCTTTATCACAAATTTTTATCTTCCCACACTCTTTTTGT
TTCTTTCTTTTTTCTTCTCTCTGTTCCTTGATTATTTTTATTTTTCATTT
TTTTATTTCCTTTTTTGCCCTCCCCTTTATACCTGTTTTATTATTTTTTC
TCACTTTTTCTTTTTTTCTGTTTTTATTCTTGTTTTACGTGCCGTATCTT
TCTTTGTTTTTTTATTATTATTTCTAATTTATTACAGTTTTTTTTTTTTT
TTGTTTCTATTTTCTCCATACTAATCTCGCNCACTGCTATTTTATACTCT
ATTTTTTCGTTTTTTGCGTTTGGCATTTATTGTTGTTATTATATTTTATC
TTCTATTTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTATGTAGCTCAGGCTAGCCTCAAG
TTCTCAGTCTTCCTGCCTTCACCTTTGGGGTGCTGTTGCATGCTGTGTCA
CCTGCCACATGTACTTTGAAATATGTGTTTTTATGAAACTGTTTGAAAGT
AGAGATGTGTGGGGTATGTGGAGAGATGTAGGTAGGTCTTTAATGTATAG
TTTGATGTATATTATATTATACTTATAGATACTATTATGAGCCTGTTCAT
GTCTTTTCTCTGTTGTGCTATTACCTCCAACTTGCTTGAGGAGACATGAC
CTATTTGCCCTTCTCGTAACGTATATCACTTTAGTTAGTAATTGTTCTGT
AATTCTGACTTTTTTTTCCTGTATTTCTTATACTATGCTAAGAATGCTGT
TACTCTACTAGCCTTGTCTTTAATTGACTTTGTTCCCTTCTTTTTTTCTT
TTTTATCCCCCCTTTCGCCTGTAACTACTCCCACTCCCTATTTTGAGTCT
CTTTTTTTTATCCTTTTCTTATTCTTACTTTATTATACCCTCCTCCATTT
ACTACCTACCTTTTCTTTTCTTCTCCTCCCATCTCCTCTATTTTTTTTTT
CTACTATGCTTCTCTTTTTTTCTCTCTCTTTATCCCTCTCAACATATCCC
CTACTACTTATACTCTTTTTCCCAATTTTAATAACCCTCCTTCATAATTA
CTCCCCTTCTCCTATATTATCATCTCTCTTCGTCCACACTCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_g04.b1 MSMg01no344_g04.b1 CHROMAT_FILE:
MSMg01no344_g04.b1 PHD_FILE: MSMg01no344_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:33 2005
         (184 letters)



>mm_chr16_93549043_93549631
          Length = 589

 Score =  253 bits (131), Expect = 4e-72
 Identities = 174/197 (88%), Gaps = 19/197 (9%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacgttgtttgtcttaaatatgacacagccagactctgtctggtcactgggcagc 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 205 gaattcacgttgtttgtcttaaatatgacacggccagactctgtctggtcattgggcagc 264

                                                                       
Query: 65  tgg-----ggggtggggaagacacaggagacagagagagagagacatcccatcctgtctc 119
           |||     |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 265 tggggggtggggtggggaagacacaggagacacacagagagagacatcccatcctgtctc 324

                                                                       
Query: 120 cattgcttgttttagtttggtttggtttggttt--ttt--tttg--ttg-------ttgt 166
           |||||||||||||||||||||||||||||||||  |||  ||||  |||       ||||
Sbjct: 325 cattgcttgttttagtttggtttggtttggtttagtttggtttggtttgggtttttttgt 384

                            
Query: 167 tgtt-ttgttttgtttt 182
           |||| ||||||||||||
Sbjct: 385 tgttgttgttttgtttt 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 589
Length adjustment: 8
Effective length of query: 176
Effective length of database: 581
Effective search space:   102256
Effective search space used:   102256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)