BAC Information

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BAC

Clone NameMSMg01-346C01
Chromosome16 (Build37)
Map Location 7,586,007 - 7,586,337
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346C01.T7 (MSMg01no346_c01.b1)MSMg01-346C01.TJ (MSMg01no346_c01.g1)
ACCAG458788AG458789
length758742
length of high quality
(start - end)
271 (40 - 310)331 (70 - 400)
definitionCHROMAT_FILE: MSMg01no346_c01.b1 PHD_FILE: MSMg01no346_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:44 2005CHROMAT_FILE: MSMg01no346_c01.g1 PHD_FILE: MSMg01no346_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TACGTTTCTCACCATCTGGTAATCTCTGGAGCTGGTTGTTATAGTTGTCT
CTGGTTAGAGCTTGTTCCTCAGGTGATTATGTTATCCTCTATCAGCAGAC
CTGGGAGACTAGATCTCTCCTTAGTTTCAGTGGTCAGAGTACTCTCTGCA
GACAAGCTCTCCTTTTGCAGGGAAGGTGCCCTGATATCTGGTGTTTGAAC
CTGCCTCATGGCAGAAGTTTTGTTCCACTCACCAGAGGTCTTAAGATCCC
GGGGAGGGTCATGTGGGGGGCCTTGTGGGCAGCTGGAGATTCTTCCCACA
ATGAATCCCGGTGCTGGCATGTCTTATAATGGTCTTGCTCACTTCTTAAT
GATTTATTTCATCACATGTCATTATGTATGTGCATATGCGTCTGCGCCTC
CGTTTTTTTTATTGTTTTATGCCCCCTCATGTTTTTGTTTTCCTTTCGCT
CCTTTTTTCCTCGCACACTGCTTTTTCCTTTTTCCCGTGTACCCCCCGCA
TTCCCCTTATCTTGCTCTTCCGTTTTCCCTCTTTTCCGCTCTTTTACCTT
TCTCTCTTCTACCCCGCCGGTATTTTTTTTTCCGGTTTCGCCTGGGCGTT
CCTTTTAGGTCGCTCTTATTTTTTTCTCTCCTCTTTTTTTTTTTCATTTG
CTGTCCCCGTTCTTTTTATTTCTTCCTTTTTCTCCCTTCCCACTCTTTTT
TCTTACCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATGTTCTATCCCCTGAATGCTAATTAATAA
GTGTGATCTTTAATAGCTGGATGATGCTGGAGGCTACCATATTGGACAGC
ACAGTTGTGGGTAAAATGAATCAATGAAGGCTGAGACCATGATAGATCGC
CACCCTAAGATTAAGTGAGTGAGGCAGCTTTCTGGGAGGAGCTAAGCTAG
ATAGGGATGCTATGGACTCTAGAAATGCAGGAGGAGAGAGGCAGGATGGA
GAAATTCTCTCTTCATGAAATTACTTTCAGTCAGACAGAAAGAGACAAGT
CGAACAAAGAAGGGTTTTGAAAGCCATAGAAATGAAGCAGCAGCTTTTAA
GATACAACTTCCACCTCAACCTTAGGGCTGGCATGTTGACCTTTGACTGA
CCTTTCATGGNAACATCCTGTGAGAGGATTTACACAGGCCAAGGCTGTGT
CCAGGAATGAAAATGTGTGCTTGAAAACAGCATATCTTGGTTTTTCAATT
TTAGCACCAGCTTCCTTTCCCATTTTTTTCCCCCAAAAAAAAAATCAAGG
CCCTTCTCCTTTCAGGGAAATGGGCCATTTTTCCCACATCCCCCCCCACA
GGGTTTAAAAGGGGGCCTTTTAAAATCCCCCAAAAAACCTGGGGGAATAA
ATAACCGGGCCCCACCGGTTTATTTGTGTTATAAAACTACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_c01.g1 MSMg01no346_c01.g1 CHROMAT_FILE:
MSMg01no346_c01.g1 PHD_FILE: MSMg01no346_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:44 2005
         (331 letters)



>mm_chr16_7585807_7586537
          Length = 731

 Score =  640 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgttctatcccctgaatgctaattaataagtgtgatctttaatagctggatgatgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgttctatcccctgaatgctaattaataagtgtgatctttaatagctggatgatgctg 260

                                                                       
Query: 61  gaggctaccatattggacagcacagttgtgggtaaaatgaatcaatgaaggctgagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggctaccatattggacagcacagttgtgggtaaaatgaatcaatgaaggctgagacca 320

                                                                       
Query: 121 tgatagatcgccaccctaagattaagtgagtgaggcagctttctgggaggagctaagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatagatcgccaccctaagattaagtgagtgaggcagctttctgggaggagctaagcta 380

                                                                       
Query: 181 gatagggatgctatggactctagaaatgcaggaggagagaggcaggatggagaaattctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagggatgctatggactctagaaatgcaggaggagagaggcaggatggagaaattctc 440

                                                                       
Query: 241 tcttcatgaaattactttcagtcagacagaaagagacaagtcgaacaaagaagggttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttcatgaaattactttcagtcagacagaaagagacaagtcgaacaaagaagggttttg 500

                                          
Query: 301 aaagccatagaaatgaagcagcagcttttaa 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 aaagccatagaaatgaagcagcagcttttaa 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)