Query= MSMg01no346_n13.b1 MSMg01no346_n13.b1 CHROMAT_FILE:
MSMg01no346_n13.b1 PHD_FILE: MSMg01no346_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:38 2005
(521 letters)
>mm_chr16_72569896_72570816
Length = 921
Score = 826 bits (427), Expect = 0.0
Identities = 455/467 (97%), Gaps = 5/467 (1%)
Strand = Plus / Minus
Query: 55 atagcgaatgcatacatgcgtgttgcatagtccttcaagtactaagtcttttatgataag 114
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 atagcgaatgcatacatgcttgttgcatagtccttcaagtactaagtcttttatgataag 862
Query: 115 ttgaaattgggctgcttttcactaactgtgaaagaaaatttatattacttagtgaagtaa 174
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 861 ctgaaattgggctgcttttcacttactgtgaaagaaaatttatattatttagtgaagtaa 802
Query: 175 acttattgttgatttaacatccttgtaaatattagatattagttaaggctagctaattct 234
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 801 acttattgttgatttaacatccttgtaaatattagaaattagttaaggctagctaattct 742
Query: 235 cttttgttttgttttgttttgttttttaagagaaaccagtgaaatttcaaagaatatttc 294
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 c-----ttttgttttgttttgttttttaagagaaaccagtgaaatttcaaagaatatttc 687
Query: 295 ctttcgataagtcaaacaactaaatacaataaggagagtaacctcaagcctctacacagc 354
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctttctataagtcaaacaactaaatacaataaggagagtaacctcaagcctctacacagc 627
Query: 355 gctgcgattgcagtctgcccagggctttgggcaagtgcgctgagcttggcacttgtcttt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctgcgattgcagtctgcccagggctttgggcaagtgcgctgagcttggcacttgtcttt 567
Query: 415 ctagatgcggaaagagtcgtttccaaagccacattctatggtcaaggcacagaatggttc 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctagatgcggaaagagtcgtttccaaagccacattctatggtcaaggcacagaatggtta 507
Query: 475 agctttagtcttcatttcctcatataactaatgaataacagacgttt 521
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agctttagtcttcatttcctcatataactaatgaataacagacgttt 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_n13.g1 MSMg01no346_n13.g1 CHROMAT_FILE:
MSMg01no346_n13.g1 PHD_FILE: MSMg01no346_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:38 2005
(563 letters)
>mm_chr16_72401273_72402231
Length = 959
Score = 1000 bits (517), Expect = 0.0
Identities = 550/563 (97%), Gaps = 4/563 (0%)
Strand = Plus / Plus
Query: 1 aaacaaaatttaagtttgaggaagaaataaggaaaatatgaataaataaataaataatgg 60
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 201 aaacaaaatttaagtttgaggaagaaataaggaaaatatg----aataagtaaataatgg 256
Query: 61 ctcttgcttaacctttcatggagaactacaaaacaacctgaccatgtagttattcatcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctcttgcttaacctttcatggagaactacaaaacaacctgaccatgtagttattcatcta 316
Query: 121 acacttaggagtggtgctggatctcatggtcagaggagttaggtaaagcagtgtcctcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 317 acacttaggagtggtgctggatctcatggtcagaggagttaggtaaagcagagtcctcaa 376
Query: 181 agtgagtaaatgaactgagacgtgcttcatcagactcagacatagagcaaatacataact 240
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 377 agtgagtaaatgaactgagacgtgcttcatcagactcagacacagagcatatacataact 436
Query: 241 caggatagtattggtgtgtttgttactcttgaggtaggtaatagttctggaaaggagctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caggatagtattggtgtgtttgttactcttgaggtaggtaatagttctggaaaggagctc 496
Query: 301 tttcaaagatttgagtcttaatctgtattaattctcccaagagaaaatttggaaatctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttcaaagatttgagtcttaatctgtattaattctcccaagagaaaatttggaaatctgc 556
Query: 361 ttataggaacgttttcatcgtatttgcataccaatatgatcagccaatccgcttgctccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttataggaacgttttcatcgtatttgcataccaatatgatcagccaatccgcttgctccc 616
Query: 421 agcatttcgatagagaaaatggcctttgcaataataatcctctaactccctcagtagaaa 480
||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct: 617 agcgtttcgatagagaaaatggcctttgcaataataatcttttaactccctcagcagaaa 676
Query: 481 caacagattcaatttctagacctaagaggattttaactataaattaatcactttaggcat 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caacagatttaatttctagacctaagaggattttaactataaattaatcactttaggcat 736
Query: 541 ataatgggattctaggaaccaca 563
|||||||||||||||||||||||
Sbjct: 737 ataatgggattctaggaaccaca 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 959
Length adjustment: 10
Effective length of query: 553
Effective length of database: 949
Effective search space: 524797
Effective search space used: 524797
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
