Query= MSMg01no347_j08.b1 MSMg01no347_j08.b1 CHROMAT_FILE:
MSMg01no347_j08.b1 PHD_FILE: MSMg01no347_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:36 2005
(444 letters)
>mm_chr16_57231744_57232587
Length = 844
Score = 586 bits (303), Expect = e-171
Identities = 312/315 (99%)
Strand = Plus / Plus
Query: 5 gaattcacacatataaggtaggctgaatagaaaaaaaggaaaggacataccacatcattt 64
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacagagaaggtaggctgaatagaaaaaaaggaaaggacataccacatcattt 264
Query: 65 ttaaagaccattcaaaaaaataaaaaggccagggacttagtaaaccatacagcacttgcc 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaaagaccattcaaaaaaataaaaaggccagggacttagtaaaccatacagcacttgcc 324
Query: 125 cagcatcctcaatgattcaatcaccagagctacaagaaaaataaaaatacacgaaggact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcatcctcaatgattcaatcaccagagctacaagaaaaataaaaatacacgaaggact 384
Query: 185 ctgtcaagctatccagttaagaaaattatactctagtcttctatcttaaatatgtcttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtcaagctatccagttaagaaaattatactctagtcttctatcttaaatatgtcttct 444
Query: 245 aacagccaggagaatcaactgtagttctgaaactgaaattccagtttaaaaaatcagttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacagccaggagaatcaactgtagttctgaaactgaaattccagtttaaaaaatcagttt 504
Query: 305 aagaaagctgccgag 319
|||||||||||||||
Sbjct: 505 aagaaagctgccgag 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_j08.g1 MSMg01no347_j08.g1 CHROMAT_FILE:
MSMg01no347_j08.g1 PHD_FILE: MSMg01no347_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:36 2005
(335 letters)
>mm_chr16_57414148_57414884
Length = 737
Score = 632 bits (327), Expect = 0.0
Identities = 335/339 (98%), Gaps = 4/339 (1%)
Strand = Plus / Minus
Query: 1 aagcgggttaaaggtgtgtgctaagggctgagccacaccacagctagaaatag--ttttt 58
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 655 aagcgggttaaaggtgtgtgctaagggctgagccacaccacagctagaaatagttttttt 596
Query: 59 tttttttcagtaataacacaatctcagggatcacattgtgatcaaatgtcctgcaacagg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tttttttcagtaataacacaatctcagggatcacattgtgatcaaatgtcctgcaacagg 536
Query: 119 atggggagccagtttacctgttttccacattgttaattgctgcagcaaatgagcatgagt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atggggagccagtttacctgttttccacattgttaattgctgcagcaaatgagcatgagt 476
Query: 179 taaaaaaccacaccccttaatgctagagaaagaggctgttcttaaatataatcacacagt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 taaaaaaccacaccccttaatgctagagaaagaggctgttcttaaatataatcacacagt 416
Query: 239 actgactcctggtttga--ttttttttttcagtatgtactgtaaataatactgtttcaaa 296
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 actgactcctggtttgattttttttttttcagtatgtactgtaaataatactgtttcaaa 356
Query: 297 actgcagaggtccaaattttacacccaaattttctaggc 335
|||||||||||||||||||||||||||||||||||||||
Sbjct: 355 actgcagaggtccaaattttacacccaaattttctaggc 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 737
Length adjustment: 9
Effective length of query: 326
Effective length of database: 728
Effective search space: 237328
Effective search space used: 237328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
