BAC Information

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BAC

Clone NameMSMg01-347L02
Chromosome16 (Build37)
Map Location 31,945,976 - 31,946,426
singlet/doubletsinglet
Overlap genePigz
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155
Downstream gene0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347L02.T7 (MSMg01no347_l02.b1)MSMg01-347L02.TJ (MSMg01no347_l02.g1)
ACCAG459972AG459973
length779901
length of high quality
(start - end)		452 (52 - 503)44 (86 - 129)
definitionCHROMAT_FILE: MSMg01no347_l02.b1 PHD_FILE: MSMg01no347_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:45 2005CHROMAT_FILE: MSMg01no347_l02.g1 PHD_FILE: MSMg01no347_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTTTGTACACCAGGCTGGCCTCGAACTCAGAAATCCAC
CTGCCTGTGCCTCCCAAGTGCTAGGATTAAAGGCGTGCACCACCACTCCC
GGGTGGAAGGCGCTTTCTTATGTGAGTTGAAGACTGACTAGAACTGAATG
TGAGCCACCCATTGTCTACTTCATCACACTTTGTCTTTGTCTCTAGAAAG
CCAGATTAGAAGTCAAATGATCGTCGTGGTAGCAGGAAGTCAGGCATTGT
GAAAAATTTGGGGGAGGCCACTCAGGAATGTCAGCAGCCATTGATTGTCT
TTCATAACCAGGTGCTACTATATATTTTAAACATGACAATGATTGGAAAT
AATGGCATAGAAGCAGACAGGCGCCCATGCTATTGAGACCATGACTGGTC
AGATCTTTGGTTGTCTAAGGCAGAGGAATGTGGGCTCGCCTAAAACAACC
TTAGGCTGTGCCCAGAACATAGAGCATCGTGGCTCCTGTTCTTATGTCTT
AGTCTCAGCATCCTGTGTATAACGTGTAATGGCCTCTATGGCTGAACCCC
GCCCCTTTTTTGCCTTCCTTTTTGCCTCCCCTTTTTACTCACTTTGTCCT
TTCATCTTGCTTTCCTTTTATTTCCCCCTCTTCCATTACTTTCCCTTTCT
TTCGCCTTCCTCCTCTTCTACTCCTTTTCTTCATCCTTTCCCTTATCTTT
TTTCCATTTTTTGTTTACCCTTCCTTGTT

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAATTCCAGGTGTCTCTTACAGACT
GTGAGATAAGGTGTCACTACGTTGTTGTTGGGAGGTGTTTTTTTTTTTTC
CCCCCCCCCCCCCCCCTCCTCCCTTCTTCCCCCCCCCCTTCTTCCTCCTC
CCCCCCTTCCCCCTCCTCCTTCCCCCCCCCCCCCTCCCCCCCCCCTTCCT
TTCTCTTTTTTTTCCCTCCCCCTCCTCCCCCCCTCCCCCTTCCCCCCTCC
TCCCCTTCCCCCACCCCCCCCCCCCCCCTCTCCCCCCCCCTCTCCCTCCC
CCCCCCCCCCCCCCCCCCCCTCTCTTCCCCCCCCCCCCTCCCCTCCTCCC
CCCCTCTCCCCCCTCCCTCCTCCTCCCCCCCCCCCCTTCTCTCCCCCCCC
CCTTCTTTTCCCTTCTTCCCCTCCCCTCTCCCCCTTTCCCCCCCCTTCCC
CCCTCCTTCCCTCCCCCTCCCCCCCTCCTCCCCCTTCCTCTTTCTTTTCC
CCCCCCCTTTTCCCCCCCTTCCCCTCCCCCCTCCTCTTCCTTCCTCTCCC
TCCCCCCCCCTCCCCCTCCTCCTCCTCCTCCCCTCCCCCCCCCCCCCCCC
CCCCCCCTTCTTCCCCTCCCCCTCCTCCCCCCCCCCCCGCTCCCCCCCCC
CTTCTCTCCCCCCCCCTTTCTCCCCCTCCCCCCCTCCCCCCCTCTTCCCT
CCTCCCCCCCCCCCTCTCCTCCTCCCCCCCCTTTCTTCTTTCTTTCCTTC
CCCTCCCCTCCCCCTCCCCCCTTTCTTTTTTCCCCCTCCCCCCCCCCCTN
TTCTCCTCCCCTTTCCCCCCTCCCCTCTCCCCCCTTTTCTCCCTCCCTCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_l02.b1 MSMg01no347_l02.b1 CHROMAT_FILE:
MSMg01no347_l02.b1 PHD_FILE: MSMg01no347_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:45 2005
         (452 letters)



>mm_chr16_31945675_31946528
          Length = 854

 Score =  822 bits (425), Expect = 0.0
 Identities = 444/451 (98%), Gaps = 2/451 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtacaccaggctggcctcgaactcagaaatccacctgcctgtgcctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ggaattcactttgtagaccaggctggcctcgaactcagaaatccacctgcctgtgcctcc 693

                                                                       
Query: 64  caagtgctaggattaaaggcgtgcaccaccactcccgggtggaaggcgctttcttatgtg 123
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 692 caagtgctaggattaaaggcgtgtgccaccactcccgggtggaaggcgctttcttatgtg 633

                                                                       
Query: 124 agttgaagactgactagaactgaatgtgagccacccattgtctacttcatcacactttgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agttgaagactgactagaactgaatgtgagccacccattgtctacttcatcacactttgt 573

                                                                       
Query: 184 ctttg--tctctagaaagccagattagaagtcaaatgatcgtcgtggtagcaggaagtca 241
           |||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 572 ctttgtctctctagaaagccagattggaagtcaaatgatcgtcgtggtagcaggaagtca 513

                                                                       
Query: 242 ggcattgtgaaaaatttgggggaggccactcaggaatgtcagcagccattgattgtcttt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggcattgtgaaaaatttgggggaggccactcaggaatgtcagcagccattgattgtcttt 453

                                                                       
Query: 302 cataaccaggtgctactatatattttaaacatgacaatgattggaaataatggcatagaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cataaccaggtgctactatatattttaaacatgacaatgattggaaataatggcatagaa 393

                                                                       
Query: 362 gcagacaggcgcccatgctattgagaccatgactggtcagatctttggttgtctaaggca 421
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gcagacaggtgcccatgctattgagaccatgactggtcagatctttggttgtctaaggca 333

                                          
Query: 422 gaggaatgtgggctcgcctaaaacaacctta 452
           |||||||||||||||||||||||||||||||
Sbjct: 332 gaggaatgtgggctcgcctaaaacaacctta 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 854
Length adjustment: 10
Effective length of query: 442
Effective length of database: 844
Effective search space:   373048
Effective search space used:   373048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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