BAC Information

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BAC

Clone NameMSMg01-348D02
Chromosome16 (Build37)
Map Location 16,897,849 - 16,898,111
singlet/doubletsinglet
Overlap genenone
Upstream gene2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b
Downstream genePpm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348D02.T7 (MSMg01no348_d02.b1)MSMg01-348D02.TJ (MSMg01no348_d02.g1)
ACCAG460349AG460350
length714813
length of high quality
(start - end)
503 (41 - 543)265 (71 - 335)
definitionCHROMAT_FILE: MSMg01no348_d02.b1 PHD_FILE: MSMg01no348_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:24 2005CHROMAT_FILE: MSMg01no348_d02.g1 PHD_FILE: MSMg01no348_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCATTTGCACTGTTGTCCAGATCAGACAGGTCTATGGCCATGTCTGTGAA
AAACTGTCTTGCCTGTGAAGTGGGAGGGCCCAGCCCATAGTGGGCAGCAC
TATCCCTAGGCAGGTAAGGTCTGAGGTATGTGAGAGAACTGGAGAGATGC
CTCAGTGGTTAAAAGTCACTTGGCTCTCAGAGGACCAGGTTTCAATTCCC
AGCACCCACATGGCAGCTCACAACTGTCTGTAACTTTCAGTTCCTGGGAA
TCTGACGCCCTCTTCTGGCCTCCATAGGCAATACACACATGTGTAGGCAA
AACACCCACACACACACACACACACACAAAACCAGAAATAAACAAAAGGT
AGCTGAGCATAAGCCAGAAAGTGAGAAAGCCAGTGAGCAACCTTCTTCAG
TAGTTCCTGCCTCCAGGTTTGTGCCTAAACTTCCCTCCATGATGGAGTAT
GACTTGGAAGTGAAAGATGAAACATGCCCATTCCTCCCCAGGCTGGCTTT
GGTCATAGTGTTATATTTATTTATCACAGCTATATATCGCTTATTATGAC
AGAGACCTTCACTATGCGATCTGCTCTTCTAGGCATTCTTATCTGAGAAG
TCTGTGAAGGGTTAATGACCCCTATATTCTGGTACAGAAAGCTGACTTGC
CCCAGGCTATGATN
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCTGTGATGTTGCCTGAAGCCAGTCTTTT
CTTGAAGACTGTCTTTGCTACCCAGTGTACTAAGGGAGAGTTTTCATTTC
CTGTGTGATCCCCCCAGACCTCAGGCTGCTTACCTCACTCTAGTGGCCAT
GCAGGCCTGCTGAGCACAAACGGCCAGGACACTGACCACATGGAGCTTAG
GATCCCTTTCAAAAGAAAAATGGCTGCACAATAATATGGCTGCACAGAAC
AGCCCATGAAAGATAGTGGGGGGGGGGGGTGTATACCCTTTTTCCTTTGC
CTTCCTCCCCTTTTCTTCCTCCTTTTTTTCTTTCTTCTTCCCTCTTCCCT
TTCCCAATTTTTTTCTTATCCTCTCACATCATTTTCCCTTTCTCCCTTTT
CTTTTTTTTCCCCCCCCTTTTTTTCTCCTGCCCCTTTTTTTCATTTTTTC
CCTTTACCTCCCGCGTCCCTTTCTAGATGAATATTATTTCTTTTCCCTTT
TTTCTTCCTTTTCCCTCTCCTCTATTTTTCCTCCCTTCCCCCCCCCCCCT
TTTTCTTCCTCTTTATTCCTCCCTCTCCCCCTCCTCTCTCTTTTCTTTTC
CCTTCTTTTTCTTCCCCTTCTTTTCTTCCGTTTCCCTTCTCATTTCTCGC
TATTTTATTTTCCACTCCCGTCACGCCGTCCCCTCTCCTCTTTCTTTCCT
TCCCCCTCCCCTTCTCCTTTCTCCTCCTTTGTCTTTTTTAGTTCCGCCTC
CCTTGTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_d02.g1 MSMg01no348_d02.g1 CHROMAT_FILE:
MSMg01no348_d02.g1 PHD_FILE: MSMg01no348_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:24 2005
         (265 letters)



>mm_chr16_16897649_16898313
          Length = 665

 Score =  485 bits (251), Expect = e-142
 Identities = 260/263 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgtgatgttgcctgaagccagtcttttcttgaagactgtctttgctacccagtgtac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ctctgtgatgttgcctgaagccagtcttttctggaagactgtctttgctacccagtgtac 260

                                                                       
Query: 61  taagggagagttttcatttcctgtgtgatccccccagacctcaggctgcttacctcactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagggagagttttcatttcctgtgtgatccccccagacctcaggctgcttacctcactc 320

                                                                       
Query: 121 tagtggccatgcaggcctgctgagcacaaacggccaggacactgaccacatggagcttag 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tagtggccatgcaggcctgctgagcacaaacagccaggacactgaccacatggagcttag 380

                                                                       
Query: 181 gatccctttcaaaagaaaaatggctgcacaataatatggctgcacagaacagcccatgaa 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gatccctttcaaaagaaaaatggcagcacaataatatggctgcacagaacagcccatgaa 440

                                  
Query: 241 agatagtggggggggggggtgta 263
           |||||||||||||||||||||||
Sbjct: 441 agatagtggggggggggggtgta 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)