BAC Information

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BAC

Clone NameMSMg01-348L24
Chromosome16 (Build37)
Map Location 13,938,478 - 13,938,954
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1
Downstream geneMpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348L24.T7 (MSMg01no348_l24.b1)MSMg01-348L24.TJ (MSMg01no348_l24.g1)
ACCAG460772AG460773
length750819
length of high quality
(start - end)
479 (62 - 540)52 (68 - 119)
definitionCHROMAT_FILE: MSMg01no348_l24.b1 PHD_FILE: MSMg01no348_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:09 2005CHROMAT_FILE: MSMg01no348_l24.g1 PHD_FILE: MSMg01no348_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTAT
AGAATACAACATAAGATGATAACTGGCTATTTGGTCTATTTGTGGTGTCC
TTGCTTGTATTTCTAAGTGGGAGTGGAGGCATAACAGTCAAGGGTTCAAG
ATTATTTCCAACTATACAGTGAGTCTGAGACAAGCCTGGACTCTATAGAC
TCTGATTTTATAAACCAAAATGAGGGGCAGCAAGGACAGCTCTGGGGTAA
ATGCTCATGACTTCAATCTCCAGAACCCATGTGGTAGACTGCCACAAAGT
GTTCTATGACCTTCCCAAATGCCATGTGCACTTATATATAAATATGCACA
CAGAAAGAAAGACACAAACACAGAGAGGCAGGGAGTTTAAAAAAAAAGGA
AGAAGGCAGTCAAGGAGAGGGAAACTGAAAGGTAAGGGAGAAGAAGGTGG
CAATCTGTAGGCCAAAGAAAGAGGAGTCAGAATAAAACCGATCCGACCTT
CCTGAACTGTTTTGTTTTGGGTTTTGGTTTTTCGAGACAGGGTTTCTCTG
TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTTAAGCAGGCTATACTCCC
ACGCAAAAATCTGCCTGCCTCTGCCTCCCAAGTGGTGGTGGGATTAAAGC
ATGGGACCCCCACTGCCCGAACTTATTTTTTTCTCTCCCGACTGGTAAAA
AAAGTGTTTTGAAAAGGGTTTTTCACTGTTCCGGGCCGCAAACCTATAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATAAATAAATATAATAATTTGATTTATAAATA
AATATATTTATAAATATATAAAATAATACCAATGACTTATGTTTCATTAA
NAAAAACGACTGGCCCTGGGTGTGAGTTGTGTTGGTGTGGCTTTGTGGTT
GGTGGAGTGGGGCTAANACATGGTAAAAAGTCAAGGCCAATCCAGGAAAC
CGGTCCCCNNNAACCCCAACCCAAAACCAAAATTAAAAGGGGGGTCTGGC
CCCAAAGGAAGTCTCAAAAAAAGGGTGTCCTGCCCAAAAAAAAAGGGAAA
TGGGGGGGGGCCCCCCGGCCCCCCGGGAAAATTTTTGGAGAACAAATTTT
TTATAAAAAAAACTCCCTTTAAGTGGGGGGGCCCCCCCCCCCCAAAAAAC
TAGAAAAAAAAAGACCCCCCCCTTATTTTCCCCCCCCCCCCCACAAAATT
TTCCCCCCCCCCTTACCAAAAAAAACCCCTCCCCCAAAAAAAAAAAAAAA
AACCCTCCCCNCCTATCATCAAACTAAAAATATTATACCCACACCCCCCC
CTTTTTCTCTCCCTTCCCACCAAAAAAAATTATCCTTTTTTCTTCCTACC
CCCACTCCACAAACAAAATCCCCCCCAACTTCCCCTCTTCCCCCCTCCCC
ATCCAACCCCCCTCATATTTTCCCACCATCCAAACACCTTCCCCCCTTCT
CTTCCTAACACCCCCCCCCACAACCATATTACCCCTTATTAACTTTCTCA
CCCTCTCCCTTGTTTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_l24.b1 MSMg01no348_l24.b1 CHROMAT_FILE:
MSMg01no348_l24.b1 PHD_FILE: MSMg01no348_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:09 2005
         (479 letters)



>mm_chr16_13938119_13938995
          Length = 877

 Score =  868 bits (449), Expect = 0.0
 Identities = 471/479 (98%), Gaps = 2/479 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagatgataactggctatttggtctatttgtggtgtccttgcttgtatttctaagtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 taagatgataactggctatttggtctatttgtggtgtccttgcttgtatttctaagtggg 777

                                                                       
Query: 61  agtggaggcataacagtcaagggttcaagattatttccaactatacagtgagtctgagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 agtggaggcataacagtcaagggttcaagattatttccaactatacagtgagtctgagac 717

                                                                       
Query: 121 aagcctggactctatagactctgattttataaaccaaaatgaggggcagcaaggacagct 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aagcttggactctatagactctgattttataaaccaaaatgaggggcagcaaggacagct 657

                                                                       
Query: 181 ctggggtaaatgctcatgacttcaatctccagaacccatgtggtagactgccacaaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 656 ctggggtaaatgctcatgacttcaatctccagaacccatgtggcagactgctacaaagtg 597

                                                                       
Query: 241 ttctatgaccttcccaaatgccatgtgcacttatatataaatatgcacacagaaagaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ttctatgaccttcccaaatgccatgtgcacttatatataaatatgcacacagaaagaaag 537

                                                                       
Query: 301 acacaaacacagagaggcagggagtttaaaaaaaaaggaagaaggcagtcaaggagaggg 360
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||
Sbjct: 536 acacaaacacagagaggcagggagt--aaaaaaaaaggaagaaggcagtcaaggagaagg 479

                                                                       
Query: 361 aaactgaaaggtaagggagaagaaggtggcaatctgtaggccaaagaaagaggagtcaga 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 478 aaactgaaaggtaagggagaagaaggtggcaatctgtagaccaaagaaagaggagtcaga 419

                                                                      
Query: 421 ataaaaccgatccgaccttcctgaactgttttgttttgggttttggtttttcgagacag 479
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ataaaacccatccgaccttcctgaactgttttgttttgggttttggtttttcgagacag 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 877
Length adjustment: 10
Effective length of query: 469
Effective length of database: 867
Effective search space:   406623
Effective search space used:   406623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)