BAC Information

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BAC

Clone NameMSMg01-348P17
Chromosome16 (Build37)
Map Location 73,385,392 - 73,385,946
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348P17.T7 (MSMg01no348_p17.b1)MSMg01-348P17.TJ (MSMg01no348_p17.g1)
ACCAG460947AG460948
length723732
length of high quality
(start - end)
499 (39 - 537)555 (70 - 624)
definitionCHROMAT_FILE: MSMg01no348_p17.b1 PHD_FILE: MSMg01no348_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:28 2005CHROMAT_FILE: MSMg01no348_p17.g1 PHD_FILE: MSMg01no348_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTCCGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAG
TCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACAGAACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTA
GATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCT
ACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTT
TCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAG
GTGTGTGGTTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTG
TCTGTCTCTATTTTTGCATCATGCTGTTTTTAACACCTTTGCTCTGTAAT
AAAGCTTTTATTTCCGGCACGGTAGATTCCTCCTGAGCTTCTTTTTTCCC
TGATAACCACTTTCTTCTATTCG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACATGATGTACTCGTTATCTAATTGGCAACT
GAAAGTGCGGTTCCTGATATGAGTCCTTGGAGACTCTTGTTTGGAAACCC
TTTATATACCATAACCCTTAATTACCTTCATTGCTAAAAGGACAATTCAA
TGGAAGCTAACATATGCATTTTTTTCCATTAAGAAAAGTCTTTAAAATGC
AATTTTATTTACTTAAAACTAATGTATGTCCACAAGGCCAAAAATAATTA
TTTCTTTTTTTCAAATATGTGCTCAAGGAACAGAAAGAGATTGAATTTAA
AGTACTTCTTAAATGGTTCGTGGAACGGCATCAATATCATGTCCAAAGGG
ACTTTTACTAATCCATTTTCTTGTCTAAAACTAAGGATTTAATGGAAATG
CTTTCTGTAATGGATGGATAAATAAGTTATTTTCGCAATGCTGTTTCACA
GGAGAGAAACTAAAGGTGATGTTACATAGTAGTATAGCAAGTTTACTTAA
GCTGTATCTTTGTAATAGATGTTATCTTCATAATAGATGCTAAGAATCCA
ATAAATTTGGTTACAGATATAGAAAGAATTTAGTTCTGGGAGGAGGAAAG
CTTGGCTGGTTAATACCATCACATTTTTCTCTAGGGAAAAGGGAATAACA
GTTTCAGGGTATTCATAGTCAAGCTCCTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_p17.g1 MSMg01no348_p17.g1 CHROMAT_FILE:
MSMg01no348_p17.g1 PHD_FILE: MSMg01no348_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:28 2005
         (555 letters)



>mm_chr16_73385192_73386146
          Length = 955

 Score = 1065 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgatgtactcgttatctaattggcaactgaaagtgcggttcctgatatgagtccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 acatgatgtactcgttatctaattggcaactgaaagtgcggttcctgatatgagtccttg 696

                                                                       
Query: 61  gagactcttgtttggaaaccctttatataccataacccttaattaccttcattgctaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gagactcttgtttggaaaccctttatataccataacccttaattaccttcattgctaaaa 636

                                                                       
Query: 121 ggacaattcaatggaagctaacatatgcatttttttccattaagaaaagtctttaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 635 ggacaattcaatggaagctaacatatgcatttttttccattaagaaaagcctttaaaatg 576

                                                                       
Query: 181 caattttatttacttaaaactaatgtatgtccacaaggccaaaaataattatttcttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 caattttatttacttaaaactaatgtatgtccacaaggccaaaaataattatttcttttt 516

                                                                       
Query: 241 ttcaaatatgtgctcaaggaacagaaagagattgaatttaaagtacttcttaaatggttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttcaaatatgtgctcaaggaacagaaagagattgaatttaaagtacttcttaaatggttc 456

                                                                       
Query: 301 gtggaacggcatcaatatcatgtccaaagggacttttactaatccattttcttgtctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtggaacggcatcaatatcatgtccaaagggacttttactaatccattttcttgtctaaa 396

                                                                       
Query: 361 actaaggatttaatggaaatgctttctgtaatggatggataaataagttattttcgcaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 actaaggatttaatggaaatgctttctgtaatggatggataaataagttattttcgcaat 336

                                                                       
Query: 421 gctgtttcacaggagagaaactaaaggtgatgttacatagtagtatagcaagtttactta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gctgtttcacaggagagaaactaaaggtgatgttacatagtagtatagcaagtttactta 276

                                                                       
Query: 481 agctgtatctttgtaatagatgttatcttcataatagatgctaagaatccaataaatttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agctgtatctttgtaatagatgttatcttcataatagatgctaagaatccaataaatttg 216

                          
Query: 541 gttacagatatagaa 555
           |||||||||||||||
Sbjct: 215 gttacagatatagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)