BAC Information

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BAC

Clone NameMSMg01-350A01
Chromosome16 (Build37)
Map Location 88,366,767 - 88,367,074
singlet/doubletsinglet
Overlap genenone
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350A01.T7 (MSMg01no350_a01.b1)MSMg01-350A01.TJ (MSMg01no350_a01.g1)
ACCAG461722AG461723
length726732
length of high quality
(start - end)
310 (340 - 649)568 (88 - 655)
definitionCHROMAT_FILE: MSMg01no350_a01.b1 PHD_FILE: MSMg01no350_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:47 2005CHROMAT_FILE: MSMg01no350_a01.g1 PHD_FILE: MSMg01no350_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTAAATTTNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCTCCACGTTACAAAAATGAGATATTGATATATA
TTGTAGCATCAAGGGGTTTTGGCAGCATCTAAAGCAGCAGAAGCTAGTCA
AACATCAGTATGTGTTTTATAGCTACATTTTCAAAAGTTCCCCATGACTA
GAATATGTGTAGAGACACAAAATAAATTTGTGTTTGCTCCAGTGGGATTG
GGTTCTGGTTGAGGGTAATGGAGGGATAGATGGGTGACTCAAGATTTCAG
AGTGTCCTAAAGAAACTGTTCTAAAAGTGATGTATATTATGACAACATGA
TTCGGGGACTGTAACTAATAAAACTTAAGGGTACATGATCTAGGATGATT
GTAGACAATATGAAGTAAACTTTAGGAAACCTACTAAAATGGGTCATGAG
AGTGTGTATTAAGAACTGGGGCACTTTGAATGAGTATTTGTCATAGTCTT
GGGCATTTGAACACTTGTTCCTAAGTTGGTGGTGGTGCTGGGTTGGATTA
GGAGGAGTAGCCTTGCTGGAGGAATCGTTACTGGGGTTGGACATTGTGAG
GACAAAGGCTTGCACTATTCTCAGTTCACTGGACTTCCTGCTTGTGGATC
AAGAATTGGGCTCTCAGCATCCAACTCCCAGCCAGCTACTTCCTCCCATG
GTTCCTCGTCACGATGGACTCTTACC
NNNNNNNCCAGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAT
ACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATC
AGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAG
AATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTATACAA
CCACTCTGGAAATCAGCCTGGCGGTTCCTCAGAAAACTGGACATAGTACT
ACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCC
CAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTT
ATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATG
GATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTA
AAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGC
ATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTA
TTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAA
GATATAATTTGCTAAACACATGAAACTCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_a01.b1 MSMg01no350_a01.b1 CHROMAT_FILE:
MSMg01no350_a01.b1 PHD_FILE: MSMg01no350_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:47 2005
         (310 letters)



>mm_chr16_88366567_88367276
          Length = 710

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacaacatgattcggggactgtaactaataaaacttaagggtacatgatctaggatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacaacatgattcggggactgtaactaataaaacttaagggtacatgatctaggatgat 260

                                                                       
Query: 61  tgtagacaatatgaagtaaactttaggaaacctactaaaatgggtcatgagagtgtgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagacaatatgaagtaaactttaggaaacctactaaaatgggtcatgagagtgtgtat 320

                                                                       
Query: 121 taagaactggggcactttgaatgagtatttgtcatagtcttgggcatttgaacacttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagaactggggcactttgaatgagtatttgtcatagtcttgggcatttgaacacttgtt 380

                                                                       
Query: 181 cctaagttggtggtggtgctgggttggattaggaggagtagccttgctggaggaatcgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaagttggtggtggtgctgggttggattaggaggagtagccttgctggaggaatcgtt 440

                                                                       
Query: 241 actggggttggacattgtgaggacaaaggcttgcactattctcagttcactggacttcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggggttggacattgtgaggacaaaggcttgcactattctcagttcactggacttcct 500

                   
Query: 301 gcttgtgg 308
           ||||||||
Sbjct: 501 gcttgtgg 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)