BAC Information

Click to search

BAC

Clone NameMSMg01-351P17
Chromosome16 (Build37)
Map Location 43,956,967 - 43,963,612
singlet/doubletdoublet
Overlap gene2610015P09Rik
Upstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1
Downstream geneZdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351P17.T7 (MSMg01no351_p17.b1)MSMg01-351P17.TJ (MSMg01no351_p17.g1)
ACCAG463222AG463223
length741742
length of high quality
(start - end)		661 (64 - 724)542 (75 - 616)
definitionCHROMAT_FILE: MSMg01no351_p17.b1 PHD_FILE: MSMg01no351_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:21 2005CHROMAT_FILE: MSMg01no351_p17.g1 PHD_FILE: MSMg01no351_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,956,967 - 43,957,627)(43,963,071 - 43,963,612)
sequence
NNNTTTGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCNGGATTCAAGAGTTGGAAGCAGTAGCCAAAGGTCATTATGAGA
GGGTCTTGCTAAGGAAAAAAGGCCTGGAGCCCTGGAAGAGACTGAGAATG
CAAAGCAAGCACAACATTGAGGTAATGTCACCATCATGGTATCAGCCCCA
AGTTAGAAAGTAGGCTTTCTCAGATAGCATGTGAGGGGAGCTTAGTGATT
TTAAAAGCCAGAACAATAACTGCCTTGAGTATGTATGTTTCTGTTTTGAG
TAAGAGTCCAGATTTGCTTCTCTACACACTTGTAATTTTACAGGTTTTGG
AAAGTAGAAGATTTTACTCGCGATCACCACTATAGGAGGAATAGAGGTGA
CTAGACTTTGTCATGGTGTCTAACAGAGACAAAGTCATAGGTGTGATTTC
TGCTATGATTATGTCCATAGACAAACCCAGAATCTCGTGCATTACAATGC
ACTACTCATCTCTCAGGAGTCTGCAGGTCACTTGTGGCTTCGCTCCCAGT
CTCTCCCCAGCCCTTCTTGCTGGTTTCAGAGCTGCTCAGGTTGTTCCTTC
CACCTAGCAATTAACTAACAGGTATAGCAAGCCAAATTACATAAGCCCTC
TGTCAGCCTCTGCAGCCCATCACCCTGAACCGGAGTCCTGTCTCCCAGGT
CCTTTTGATCTCCATCAAAAATAGAGTGTTGAGTCCAGCAT

NNNNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGGTGTGTGGGTGGAGATAGCCTGC
ACACGTCCAGGCACCAGAGACTTCCCTCGGCGGGCAAGCGGGTAGCTACT
GGATGCAGCCATCACGGAGGCACCAGCATCTGGAAGTCTGGAAGGATTTC
GGAGACCTTCCGGCGGAGGTGGTCTCGGCGTTCTTCCTTCACTCTTTCTT
CTTTGGTAAGTTTTACAAATGCCTTCCACATCTCCAGGGTGAGCATGAGA
ATCTTCCTTTAAGGGGAAAGGGAGAGGGGAAATCAATGGGAATTCCGACA
GCACACAGTGCTACTGAAAAGAATAGATGGGGTGACTGGTGAGTGACGCT
GCACAGAGAGCCCAGTGCTAACAGTGCTGGCTTTGGGACTCCTCAGCTGG
CCTGGCCACAGCCTGTATATCGACCAACCAGGACCAGGCATCAGGATGGG
CTTGGGCAGGCAGCTGCCAAGGTAAAGATGACTGACTGTACTGGGAGAGC
TCAGTTTAAAGCCTGACTGGCAAGCTCATCTCCAACTACACCAGAAAGGA
GCTAGACTTTTGCTGAGGCCAATGCTAACGCCAAGGGTGGCAGTGAAATC
GAGTGCTGTCTGTGGGAAACACATCTGCCTTCTGAGGAGGGACCAAGCCT
ACACCAGATGGCCACTGGGGATGCTGAGCAAGGGCTAACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_p17.b1 MSMg01no351_p17.b1 CHROMAT_FILE:
MSMg01no351_p17.b1 PHD_FILE: MSMg01no351_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:21 2005
         (661 letters)



>mm_chr16_43956767_43957827
          Length = 1061

 Score = 1263 bits (653), Expect = 0.0
 Identities = 659/661 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagagttggaagcagtagccaaaggtcattatgagagggtcttgctaaggaaaaaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagagttggaagcagtagccaaaggtcattatgagagggtcttgctaaggaaaaaaggc 260

                                                                       
Query: 61  ctggagccctggaagagactgagaatgcaaagcaagcacaacattgaggtaatgtcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggagccctggaagagactgagaatgcaaagcaagcacaacattgaggtaatgtcacca 320

                                                                       
Query: 121 tcatggtatcagccccaagttagaaagtaggctttctcagatagcatgtgaggggagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatggtatcagccccaagttagaaagtaggctttctcagatagcatgtgaggggagctt 380

                                                                       
Query: 181 agtgattttaaaagccagaacaataactgccttgagtatgtatgtttctgttttgagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgattttaaaagccagaacaataactgccttgagtatgtatgtttctgttttgagtaa 440

                                                                       
Query: 241 gagtccagatttgcttctctacacacttgtaattttacaggttttggaaagtagaagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtccagatttgcttctctacacacttgtaattttacaggttttggaaagtagaagatt 500

                                                                       
Query: 301 ttactcgcgatcaccactataggaggaatagaggtgactagactttgtcatggtgtctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttactcgcgatcaccactataggaggaatagaggtgactagactttgtcatggtgtctaa 560

                                                                       
Query: 361 cagagacaaagtcataggtgtgatttctgctatgattatgtccatagacaaacccagaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagacaaagtcataggtgtgatttctgctatgattatgtccatagacaaacccagaat 620

                                                                       
Query: 421 ctcgtgcattacaatgcactactcatctctcaggagtctgcaggtcacttgtggcttcgc 480
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ctcatgcattacaatgcactactcatctctcaggagtctgcaggccacttgtggcttcgc 680

                                                                       
Query: 481 tcccagtctctccccagcccttcttgctggtttcagagctgctcaggttgttccttccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcccagtctctccccagcccttcttgctggtttcagagctgctcaggttgttccttccac 740

                                                                       
Query: 541 ctagcaattaactaacaggtatagcaagccaaattacataagccctctgtcagcctctgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagcaattaactaacaggtatagcaagccaaattacataagccctctgtcagcctctgc 800

                                                                       
Query: 601 agcccatcaccctgaaccggagtcctgtctcccaggtccttttgatctccatcaaaaata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agcccatcaccctgaaccggagtcctgtctcccaggtccttttgatctccatcaaaaata 860

            
Query: 661 g 661
           |
Sbjct: 861 g 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_p17.g1 MSMg01no351_p17.g1 CHROMAT_FILE:
MSMg01no351_p17.g1 PHD_FILE: MSMg01no351_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:21 2005
         (542 letters)



>mm_chr16_43962871_43963812
          Length = 942

 Score = 1033 bits (534), Expect = 0.0
 Identities = 540/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggtgtgtgggtggagatagcctgcacacgtccaggcaccagagacttccctcggcggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 742 ctggtgtgtgggtggagatagcctgcacacgtccaggcaccagagacttccctcagcggg 683

                                                                       
Query: 61  caagcgggtagctactggatgcagccatcacggaggcaccagcatctggaagtctggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caagcgggtagctactggatgcagccatcacggaggcaccagcatctggaagtctggaag 623

                                                                       
Query: 121 gatttcggagaccttccggcggaggtggtctcggcgttcttccttcactctttcttcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gatttcggagaccttccggcggaggtggtctcggcgttcttccttcactctttcttcttt 563

                                                                       
Query: 181 ggtaagttttacaaatgccttccacatctccagggtgagcatgagaatcttcctttaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggtaagttttacaaatgccttccacatctccagggtgagcatgagaatcttcctttaagg 503

                                                                       
Query: 241 ggaaagggagaggggaaatcaatgggaattccgacagcacacagtgctactgaaaagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggaaagggagaggggaaatcaatgggaattccgacagcacacagtgctactgaaaagaat 443

                                                                       
Query: 301 agatggggtgactggtgagtgacgctgcacagagagcccagtgctaacagtgctggcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agatggggtgactggtgagtgacgctgcacagagagcccagtgctaacagtgctggcttt 383

                                                                       
Query: 361 gggactcctcagctggcctggccacagcctgtatatcgaccaaccaggaccaggcatcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggactcctcagctggcctggccacagcctgtatatcgaccaaccaggaccaggcatcag 323

                                                                       
Query: 421 gatgggcttgggcaggcagctgccaaggtaaagatgactgactgtactgggagagctcag 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 gatgggcttgggcaggcagctgtcaaggtaaagatgactgactgtactgggagagctcag 263

                                                                       
Query: 481 tttaaagcctgactggcaagctcatctccaactacaccagaaaggagctagacttttgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttaaagcctgactggcaagctcatctccaactacaccagaaaggagctagacttttgct 203

             
Query: 541 ga 542
           ||
Sbjct: 202 ga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |