BAC Information

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BAC

Clone NameMSMg01-353E20
Chromosome16 (Build37)
Map Location 74,955,366 - 74,955,831
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353E20.T7 (MSMg01no353_e20.b1)MSMg01-353E20.TJ (MSMg01no353_e20.g1)
ACCAG464213AG464214
length761765
length of high quality
(start - end)
490 (53 - 542)466 (83 - 548)
definitionCHROMAT_FILE: MSMg01no353_e20.b1 PHD_FILE: MSMg01no353_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:08 2005CHROMAT_FILE: MSMg01no353_e20.g1 PHD_FILE: MSMg01no353_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAA
AAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACAC
TGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGT
GACAGCAGACGTTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCATTCTGGCGAT
TCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTC
CTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGAACACATGCTC
CACTATGTTCATAGCAGCCTTGTTGTTAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAC
ACAATGGAATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTA
GGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAATTTTGAT
CTCACATTAAAGTGAGAAAACCAACACCTAGATGTTGTCATCTGAGTTCC
CCATGTGTGTTGTGGCACTTATATGTTCTAATACATAAATACCTACCACA
TAACCGCCCCCCAAACTATATTGGTGGGGGTGAAAAGTTAAATGTTTTAC
TTAAGGCCCCC
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATATGGAGTTGTAT
AAGTGCTATGGAGAGGCTAACTATGTAGGCTCAATTTATATAACGTTATA
GAAATCATAATTAAATGGGGAACATTATAAAAAGGGAAACTCTTACAAGA
AAACAATCTTGGTGCATTCCACAAGTTTTCAAGCAGCAGGGATGAACATG
TGCTGTCTGTTCTTGGGTCACTATAGGTTCTCATTCTGTCAGATCTAGGC
GGTCATGAAGTTGTGAGCACCGTGTGGAGAAGAAATGCTTTTCCTTAAAT
TGATGACAAGCTAAAATAGAACTCAGGTTTCTCCAGAGTTCTCTCAACAC
AAAAAGTGTATGCACTTAAGCAAAAAGCCAATGTAGTTCAAGTGTGGTAC
CATAGATTTGGGCACACATGAGAATTTTCAGGGGAAAATGGCTCCACTGG
AAAACATACATTCAAATCCCTTCTCATTTCTACGTCATCTTTTTAGAATA
CAGCACTTTGATAGCTGACTTTCCTTGGAGCCAATCAAGCATATCTTCTG
ATGAGGGTAAACTTTTCAGTCCTCATTTTTTCTAAAGTTGCACTTGTTCC
CAAAAATTTTTTTTAATTCAAACGACTCCCTTATCCGAAAGTGGCTAAAT
GGTTCCCTTGAACAAACGGGAAAAGCTTAACCTTTTTGGCTCTTCAATAA
ACCTTTAAGGCACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_e20.g1 MSMg01no353_e20.g1 CHROMAT_FILE:
MSMg01no353_e20.g1 PHD_FILE: MSMg01no353_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:08 2005
         (466 letters)



>mm_chr16_74955166_74956031
          Length = 866

 Score =  893 bits (462), Expect = 0.0
 Identities = 465/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaatatggagttgtataagtgctatggagaggctaactatgtaggctcaatttatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaatatggagttgtataagtgctatggagaggctaactatgtaggctcaatttatata 260

                                                                       
Query: 61  acgttatagaaatcataattaaatggggaacattataaaaagggaaactcttacaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgttatagaaatcataattaaatggggaacattataaaaagggaaactcttacaagaaa 320

                                                                       
Query: 121 acaatcttggtgcattccacaagttttcaagcagcagggatgaacatgtgctgtctgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatcttggtgcattccacaagttttcaagcagcagggatgaacatgtgctgtctgttc 380

                                                                       
Query: 181 ttgggtcactataggttctcattctgtcagatctaggcggtcatgaagttgtgagcaccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggtcactataggttctcattctgtcagatctaggcggtcatgaagttgtgagcaccg 440

                                                                       
Query: 241 tgtggagaagaaatgcttttccttaaattgatgacaagctaaaatagaactcaggtttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggagaagaaatgcttttccttaaattgatgacaagctaaaatagaactcaggtttct 500

                                                                       
Query: 301 ccagagttctctcaacacaaaaagtgtatgcacttaagcaaaaagccaatgtagttcaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagagttctctcaacacaaaaagtgtatgcacttaagcaaaaagccaatgtagttcaag 560

                                                                       
Query: 361 tgtggtaccatagatttgggcacacatgagaattttcaggggaaaatggctccactggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtggtaccatagatttgggcacacatgagaattttcaggggaaaatggctccactggaa 620

                                                         
Query: 421 aacatacattcaaatcccttctcatttctacgtcatctttttagaa 466
           ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 aacatacattcaaatcccttctcatttctacatcatctttttagaa 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)