BAC Information

Click to search

BAC

Clone NameMSMg01-354E18
Chromosome16 (Build37)
Map Location 39,194,139 - 39,194,605
singlet/doubletsinglet
Overlap genenone
Upstream geneGsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354E18.T7 (MSMg01no354_e18.b1)MSMg01-354E18.TJ (MSMg01no354_e18.g1)
ACCAG464962AG464963
length752761
length of high quality
(start - end)		577 (47 - 623)467 (77 - 543)
definitionCHROMAT_FILE: MSMg01no354_e18.b1 PHD_FILE: MSMg01no354_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:24 2005CHROMAT_FILE: MSMg01no354_e18.g1 PHD_FILE: MSMg01no354_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAAATCTCTCATTTTCTGCCCCTTGGCCAGTTGCGGGTCCTTC
TCTATGTTAATAACCATCTACTGCACAAAGAACAGTCTCTGATGACAGTT
GAGAGATGCTCTAGTAGATACAGCAAGTAGTCTTTAGGAGACAGCTAAAA
ACAGAACAGTTGTAGGTTCTACTTTAAGGCATGGGTACTAATCTCCACTA
ATAGTGCCAGGGAAGGAGTCTGTCCTGTGCAGAAAGACTTAGGTCCAATC
AGATAGTGGTTAATTATTCACATTATATTCATGTTATTATTGATTGCTGG
GCATATCTTTCCAGGGAAGTTGTTATTGTGACTCACAGAGTTCACAGATA
GGAAGAACTGATGAGTTATTTTCTATTCCAGTAGCATGCAAAGATGCTGG
TGTTGATGTATGGAAAAAGAAAACCTTATTCACTGTTGGTGGAAATGCAG
ATTGTTGAAGCCATTATGGAAATTAGTATGTGGTGTGCCTTAAAAAGCTA
GAAATAGAACAAACATGTTTCAGCTATAGTATTCCTGGCATATACTCTAA
TCATTCTTTATCCTACTACAAAGATAATTGATTATCCACATTCATTGCTT
CCATATTCACAATAGCCTATTAAAATGGAGATAACTTATCTGTCTGTCAA
CTGGTGACCAGATAATAAAAATGCGGCTCATTTATACCATGAAACGCGAT
TC

NCGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCTGGTCTTTATTTCCACAC
AGCTTACTAACGCCTTTTGTTCACATCACATTGTCCAGCAGTCTGAATGT
CTTTTTGGTTCTAGGTGCTGCCCAATGCGTGAGGCAACCTTTGATGAAAC
TTGGTTGATTCAGTTTATGAACAGGCTGTTTCAGAACAAAAGCAACTGTT
GGCTCATCTACTCTTTCATTTTAAAATAATATTATTCTTATATTATTTTG
AATATAATATATTATTTTATATATTTGCCTGCACGTCTGTCTGTGTGAGG
GTGTCATATATTGGAGTTTCAGACAGTTGGGGACTGCCGTATGGGTGCTG
GGAATTGAACCTGGGTCCTTTGGAAGAGTAGTCAGTCCTCTTAATCTCTT
CAGTCCTTGCCCACCTACTTTTCTTGACTGCATCATCTTTATCTTTTAGG
ACTACATATCCAAGATTCTCTCTTCAGCAGGTTATGTGCTAGGTTTGGCC
AATGAAAGGTATTTTTATGAGATTTAGAAGCCTTAAAGGAACAGAAGTCT
TGAATTTCTGAAGCTGTGAGTGGCANCCGGGGGGGGGTGGGTTCTTTATT
CTCCTCCTCCATTATTCATCCATTCTCCTTTTTATTTTCCTAATTTATTC
TTCCTATTATCTCTCTCTTTTTTATATCTCTCCATTCTTCCTCTTTTTTC
TCTCCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_e18.g1 MSMg01no354_e18.g1 CHROMAT_FILE:
MSMg01no354_e18.g1 PHD_FILE: MSMg01no354_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:24 2005
         (467 letters)



>mm_chr16_39193939_39194805
          Length = 867

 Score =  903 bits (467), Expect = 0.0
 Identities = 467/467 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttctggtctttatttccacacagcttactaacgccttttgttcacatcacattgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttctggtctttatttccacacagcttactaacgccttttgttcacatcacattgtcc 260

                                                                       
Query: 61  agcagtctgaatgtctttttggttctaggtgctgcccaatgcgtgaggcaacctttgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagtctgaatgtctttttggttctaggtgctgcccaatgcgtgaggcaacctttgatg 320

                                                                       
Query: 121 aaacttggttgattcagtttatgaacaggctgtttcagaacaaaagcaactgttggctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacttggttgattcagtttatgaacaggctgtttcagaacaaaagcaactgttggctca 380

                                                                       
Query: 181 tctactctttcattttaaaataatattattcttatattattttgaatataatatattatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctactctttcattttaaaataatattattcttatattattttgaatataatatattatt 440

                                                                       
Query: 241 ttatatatttgcctgcacgtctgtctgtgtgagggtgtcatatattggagtttcagacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatatatttgcctgcacgtctgtctgtgtgagggtgtcatatattggagtttcagacag 500

                                                                       
Query: 301 ttggggactgccgtatgggtgctgggaattgaacctgggtcctttggaagagtagtcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggggactgccgtatgggtgctgggaattgaacctgggtcctttggaagagtagtcagt 560

                                                                       
Query: 361 cctcttaatctcttcagtccttgcccacctacttttcttgactgcatcatctttatcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctcttaatctcttcagtccttgcccacctacttttcttgactgcatcatctttatcttt 620

                                                          
Query: 421 taggactacatatccaagattctctcttcagcaggttatgtgctagg 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggactacatatccaagattctctcttcagcaggttatgtgctagg 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |