BAC Information

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BAC

Clone NameMSMg01-356I18
Chromosome16 (Build37)
Map Location 75,575,413 - 75,575,920
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665042, D930038D03Rik
Downstream geneRbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356I18.T7 (MSMg01no356_i18.b1)MSMg01-356I18.TJ (MSMg01no356_i18.g1)
ACCAG466663AG466664
length759784
length of high quality
(start - end)
509 (62 - 570)405 (69 - 473)
definitionCHROMAT_FILE: MSMg01no356_i18.b1 PHD_FILE: MSMg01no356_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:18 2005CHROMAT_FILE: MSMg01no356_i18.g1 PHD_FILE: MSMg01no356_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TTTCATATCCATGAAACATGAGGAGCACCTTTGTACCAAACAGTAACAAC
GTACACTCACCCCGAAAACCCCTACCCACTCCCCAAGGCTTATATAGCTG
TTCATACCCCCAATAAAAGTAGCTGTTTCATTGAAAATCCATCTGAGAAG
TCCTTTTCTGCCCACACGGAGCCGAGAGCCTAGAAACCCGCCACCCTGCC
CAACAGGTAAGCTTTGTTTCTTCCATTTTGAGTAGGTATGCAATGGTGAC
TGGATACCCTGCAGGCAAAAGCAGAACTGGGCCAGCAATAAAATACTGCT
AGGAAGTTTTATATATGTGTGTGCAGTGTGTATATATTAAACACATTAAA
GTTATTTTTATAGTATTTGAATTAAAATGAGAAATTATATTATTACTAAA
GATAATAATCACAAGATTTTGTATAATGGCACAAAGTATAAAATACCTTT
ATCTATCTGTTATTACTTGTCTATCATCTACCTCTGTATTCATTTATTCA
CCTACCCATCCTAGAAGAATGAAGGCCAGAAAATGAAATAACTAAAATTG
TTGAATACCAGCGGCCACTGGAAGCAGTAACATAATGGCTGCTTTATGTT
TAGATCTTTGTAGCTTTTCCAAAATTGGGATGGTTGAATAAGCTTGACTA
CACATATTTTTCATGTCGCACTGCTTTGCGGCAAATTTCGATGATCTATT
TACCCAATA
AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTATAATTCTCAAGGACAAGGTATTGTGGAA
CTTTAAAACAATATCTTCTTAAAAAACAAAAAAGGGAGCCCTATGATCCA
TCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCA
TAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAATAAAATCTTGCT
AGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCC
TGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGCTCCAAACT
TTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAATCTAAGGAGG
GGCATAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTTTCATGTGTTT
AGCAAATTATATCTTATATCTTGGGTATCCTAGGTTTGGGGCTAATATCC
ACTTATCAGTGAACAATTACCGTGTGAGTTTTCTTTGTGAACGGGTTACT
TCCTCTCGAATATGGCCCTTCCGTTCTTTCCTCTTGCCCTTGCAATTTCA
ACATTTTTCCTTTTTATATGGGACCTAATATTCCATTGTCGTATAGGTCT
CCAACTCTTTGTTCCCTGTACGTTTTCCCACACTTATTCTTTTCACCTTA
TCTTTCCTTTCACCCTCCTGCTCCTTATTTTCCCCTCTTGTTTATCACTA
TTTACCGTTCCCTTACAATCTCTTCCTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_i18.b1 MSMg01no356_i18.b1 CHROMAT_FILE:
MSMg01no356_i18.b1 PHD_FILE: MSMg01no356_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:18 2005
         (509 letters)



>mm_chr16_75575209_75576120
          Length = 912

 Score =  920 bits (476), Expect = 0.0
 Identities = 501/512 (97%), Gaps = 7/512 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaacatgaggagcacctttgtaccaaacagtaacaacgtacactcaccccgaaaaccc 60
           |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 205 tgaaacatgaggagcacctttgtaccaaacagtaat---gtacactcaccccgaaaaccc 261

                                                                       
Query: 61  ctacccactccccaaggcttatatagctgttcatacccccaataaaagtagctgtttcat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 262 ctacccactccccaaggcttatatagctgttcatacccc-aataaaagtagctgtttcat 320

                                                                       
Query: 121 tgaaaatccatctgagaagtccttttctgcccacacggagccgagagcctagaaacccgc 180
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 321 tgaaaatccatctgagaagtccttttctgcccacactgagccaagagcctagaaacccgc 380

                                                                       
Query: 181 caccctgcccaacaggtaagctttgtttcttccattttgagtaggtatgcaatggtgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccctgcccaacaggtaagctttgtttcttccattttgagtaggtatgcaatggtgact 440

                                                                       
Query: 241 ggataccctgcaggcaaaagcagaactgggccagcaataaaatactgctaggaagtttta 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ggataccctgcaggcaaaagcagaactgagccagcaataaaatactgctaggaagtttta 500

                                                                       
Query: 301 tatatgtgtgtgcagtgtgtatatattaaacacattaaagttatttttatagtatttgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatgtgtgtgcagtgtgtatatattaaacacattaaagttatttttatagtatttgaa 560

                                                                       
Query: 361 ttaaaatgagaaattatattattactaaagata---ataatcacaagattttgtataatg 417
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 561 ttaaaatgagaaattatattattactaaagatattaataatcacaagattttgtataatg 620

                                                                       
Query: 418 gcacaaagtataaaatacctttatctatctgttattacttgtctatcatctacctctgta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacaaagtataaaatacctttatctatctgttattacttgtctatcatctacctctgta 680

                                           
Query: 478 ttcatttattcacctacccatcctagaagaat 509
           ||||||||||||||||||||||||||||||||
Sbjct: 681 ttcatttattcacctacccatcctagaagaat 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 912
Length adjustment: 10
Effective length of query: 499
Effective length of database: 902
Effective search space:   450098
Effective search space used:   450098
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)