BAC Information

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BAC

Clone NameMSMg01-357B05
Chromosome16 (Build37)
Map Location 84,232,226 - 84,375,083
singlet/doubletdoublet
Overlap geneLOC640489
Upstream geneEG545172, LOC100039572, EG621729
Downstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357B05.T7 (MSMg01no357_b05.b1)MSMg01-357B05.TJ (MSMg01no357_b05.g1)
ACCAG467065AG467066
length812755
length of high quality
(start - end)		197 (40 - 236)478 (76 - 553)
definitionCHROMAT_FILE: MSMg01no357_b05.b1 PHD_FILE: MSMg01no357_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:59 2005CHROMAT_FILE: MSMg01no357_b05.g1 PHD_FILE: MSMg01no357_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,374,896 - 84,375,083)(84,232,226 - 84,232,703)
sequence
NTTAATTTGCNNCCGCTATACAACTCACTATATGCAGAGGATCCGCGGAA
TTCAGGGACTTCCAGGCATATCGTAATGAGTGTTCTAAAAATGATCCAAT
TCATCTTAAACTTCATTGTGTCTACTCCTCCGGTTAAGTTAGGTTTGTTT
AATTGGAAAAATGTAAACTTGTTGTTTATATCCTCTAGGATTTATCACAT
ATGGATACTGCTTGCATTCAAAGGGATATGTAAGGNGTAAGTATCGGCTT
TTTTTTAANTACAAGAGNGGGGAAAAGAAACCCCTATTTTATTAAGTAAG
NNNNNCCCNNAAATATAAAATTTNNNCTTAACCTGGCGGGGGGGTGAAAA
GTCTACAAAAANNNNNACTGCTGCTTNGGAATTTAAAAACTAAATTTCTC
TATTTCCAAACCAAAAAATCTAAAAAATTTTTCCACTTAAAAAAAATTTT
TTTTTTTTTTCTTCTTGAAAAATCCAATTGTTTTTATTTTTCTTAANGCC
CCCCCCCCCTTTTTTAATTTCCAACCTCCCAAAAAAAAAATTTCCTTACT
CACAAAAAAACCCCCCCCCCCCCAATTTTTTTTCCACATAACCTCCCCCC
CCTCCAACCCCCCNCCTNTNTTTTTTTTTTTTTTTTAAAATTTCTTTTTA
TATAATACACCCCCTACCTTTNCCATTTCCCCTTCTTTTCTTTTTTTTTC
TCCTTATCTTCCTTGTTCTCTTAAANCCNNCCCCCCTCCTCTCCTTTTTT
TTCTTTCTTTTTAAACCTTTTCTTTTTCTCCCCTTTTTCCCTAACACAGT
GTGGGGGGGATG

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAAGCTATGTAGAGA
GACTTGAATACAGAGTGAGATCATATTTATTTGGGGCTAACTGGGCAGAT
AAAGGAGCATTAATTTGTTTAAAAGGAATATTTAGAAGTATTTGGAGATC
AAGATGTGCCCACCTCTGTAATAAAGGCTTGACATTTTAGGGAATAACCA
ATGGCTTCTGGATAGATTCAACATCCTCAACGTGAGCAAAGAGAAACCAG
TGTCTGGCACGTAACCTGACTAACATTTCAGGAACGGTGAGGTAGTACAA
TCCTAACAGGATGTTTTCTGATGGTTAACTAAACTGATACAGCAGCCAGC
AAACTGCTTTTTTAATTTCCTGTGTTAATTAAAACAATAAACTCTGGGGG
CTCAGTAGTTAAGAGCACCAAATGATCTTCCAGAAGTCCTGGGTTCAATT
CCCAGCAACCACATGGTGGCTCACAACCATTTGTAATGGGATCTGATGCC
CTCCTCTGCTGTATGTCTGAAAACCAGTACAGTGTCCTCATATAAAAAAA
ATAATTCTTTTTTAAAATAAACTCCCACTGAAAGAAGCTTGGCCCCGAAG
AAGTCCCCCCCCTTTTCCCCTGGGGGATATAAAAAAAACTTTCTTGGAAA
AGAACTGGGTTTACCTTTCACCTTTTTTTCTCGCCAAAAAATGGGTCCGG
TGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_b05.b1 MSMg01no357_b05.b1 CHROMAT_FILE:
MSMg01no357_b05.b1 PHD_FILE: MSMg01no357_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:59 2005
         (197 letters)



>mm_chr16_84374688_84375284
          Length = 597

 Score =  356 bits (184), Expect = e-103
 Identities = 187/188 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcagggacttccaggcatatcgtaatgagtgttctaaaaatgatccaattcatctt 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaattcagggacttccaggcatatcgtaatgagtgttctaaaaatgatccaattcatctt 337

                                                                       
Query: 69  aaacttcattgtgtctactcctccggttaagttaggtttgtttaattggaaaaatgtaaa 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaacttcattgtgtctactcctccggttaagttaggtttgtttaattggaaaaatgtaaa 277

                                                                       
Query: 129 cttgttgtttatatcctctaggatttatcacatatggatactgcttgcattcaaagggat 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 276 cttgttgtttatatcctctaggatttatcacatatggatactgcttgcattcagagggat 217

                   
Query: 189 atgtaagg 196
           ||||||||
Sbjct: 216 atgtaagg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no357_b05.g1 MSMg01no357_b05.g1 CHROMAT_FILE:
MSMg01no357_b05.g1 PHD_FILE: MSMg01no357_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:59 2005
         (478 letters)



>mm_chr16_84232026_84232903
          Length = 878

 Score =  855 bits (442), Expect = 0.0
 Identities = 469/478 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccaaagctatgtagagagacttgaatacagagtgagatcatatttatttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccaaagctatgtagagagacttgaatacagagtgagatcatatttatttggg 260

                                                                       
Query: 61  gctaactgggcagataaaggagcattaatttgtttaaaaggaatatttagaagtatttgg 120
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gctaactgagcagataaaggagcattaatttggttaaaaggaatatttagaagtatttgg 320

                                                                       
Query: 121 agatcaagatgtgcccacctctgtaataaaggcttgacattttagggaataaccaatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatcaagatgtgcccacctctgtaataaaggcttgacattttagggaataaccaatggc 380

                                                                       
Query: 181 ttctggatagattcaacatcctcaacgtgagcaaagagaaaccagtgtctggcacgtaac 240
           ||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ttctgaatggattcaacatcctcaacgtgagcaaagagaaaccagtgtctggtacgtaac 440

                                                                       
Query: 241 ctgactaacatttcaggaacggtgaggtagtacaatcctaacaggatgttttctgatggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgactaacatttcaggaacggtgaggtagtacaatcctaacaggatgttttctgatggt 500

                                                                       
Query: 301 taactaaactgatacagcagccagcaaactgcttttttaatttcctgtgttaattaaaac 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 taactaaactgatacagcagccagcaaactgcttttttaattccctgtgttaattaaaac 560

                                                                       
Query: 361 aataaactctgggggctcagtagttaagagcaccaaatgatcttccagaagtcctgggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataaactctgggggctcagtagttaagagcaccaaatgatcttccagaagtcctgggtt 620

                                                                     
Query: 421 caattcccagcaaccacatggtggctcacaaccatttgtaatgggatctgatgccctc 478
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct: 621 caattcccagcaaccacatggtggctcgcaaccatctgtaatgggatctgatgtcctc 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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