BAC Information

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BAC

Clone NameMSMg01-364D20
Chromosome16 (Build37)
Map Location 87,098,098 - 87,098,403
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364D20.T7 (MSMg01no364_d20.b1)MSMg01-364D20.TJ (MSMg01no364_d20.g1)
ACCAG472485AG472486
length847788
length of high quality
(start - end)
349 (51 - 399)403 (80 - 482)
definitionCHROMAT_FILE: MSMg01no364_d20.b1 PHD_FILE: MSMg01no364_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:17 2005CHROMAT_FILE: MSMg01no364_d20.g1 PHD_FILE: MSMg01no364_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATC
CGCGGAATTCTCCAATATCTTGCTGGGCTCACTAAGAGGTATACAAAAGA
TGACAATGACTCCTCCTTCTCAAAATCTATAAGTTCTAGCAGTTCAGGAC
AGGGTAACTCAGTGCCCCTTGAGACTTTCTTTCATGCATGGTTGGTTGTT
CACTAGCCCAATATTGTTTAAGCTCAATTAAGCAAGCACAGTTATATTAA
GTTCATGTTTATACAGCTGCATCATGCCCAAAGGAATGCATTTGAAACCC
CTCTCCCTATATTTTGAATCTTACATTCTTTCCTTCCCATCTTCTGCGGT
GTCCCAGGAGATTTAGAGAGCAGTAGAAATGTCTTATTTATGACCAAAGA
CTTAACCTTCACTTTATTCTCAGCACCACGAGCAAACAAATGTCATTCAT
TGGCCTTTCCCAGCCAAAGAAGAACTCTCCCCTTCAGGGTGAAAAACTAT
TGGCCCCTGGGATAATAATATCTGTCTTATTGGGATACAATTTGTCCGTT
TATTATCATTGTTTCTCCCATCTTCCTCTTTATTGTCCCTTTTTTTCGAG
CCTCTTTATCTTTTCTATCTCTCTTCTTTCCTCTTTTTTTTTCCTCCTTA
CCCTCCCCATTTTTTTTTTCTCCTCATATTATCTCCCACTTGTTTTTTTG
TTTGTTTTCATCTTCTTCCTTACTCCTTACCCTCTAGCCCATCATTCTGT
TTTTCTCTTCGCACTCACTCCCCTTTTTTCTTGTTTTCCCTTCTTTTTTT
TCCTATTGTCCCTATCTCTCATTATCCCTCCTTAGCTTCTATGACTA
TTTTTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCAAGTCTCTCTAAAATAG
GTTCAGTTGACTTTGGACTGAAAAGTTGAAACTGTGAAACCAACTAAATC
TTTCTTCTGTTTTCTAAGTTTCTTTGGTTATTGTCTTTGGGTTTTTCATT
TCCTGGGACAAATGCCATGACCAAAAGCAACATGGGGAGAAAAGGGTTTA
TTGAATCTTATAGATTCTTATCACGAATGGAATTTTGAGCAGGAACTCAA
AGCAGGAAGCCAAAGAACTTCTATGTCAATCATTAATCAAGAAAATGTCC
AACACACTTACCAAAATGCCAATCTTATGAAGGCATTTTTCTCTTTCTTC
TGAGATATGTCTAGGTTTGTGTCAAGTTGACAGAAAAACAACCAGCGAAG
TCCTAGCATCGTATTGCATAAATTAAAATCAAACTGGGACTAGGACCAAA
CCATATGTATATTCTGAGGCAACCCCGATTTAAAAAGATGGCAAATGATT
CAAACTATTACTTTCTAAGAATTTATTAATATTGGGGGGGGAGGAGGAAT
AATCCCAAATCCCCTATATTAACTAATATGTTAATTACTTTCATAGGTAT
TTTCTTGCGGCCCATTTTGTTTTTTTTACTGCCTTATCCGAAAGATTTTA
TTTTCTGCGCGAACAAGTTTTATGTTATATACTTTTTTTGTTCCATCTTT
TGTTTTCTATTCTGTATTTGTATCACTCATCAGAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_d20.g1 MSMg01no364_d20.g1 CHROMAT_FILE:
MSMg01no364_d20.g1 PHD_FILE: MSMg01no364_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:17 2005
         (403 letters)



>mm_chr16_87098098_87098900
          Length = 803

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcaagtctctctaaaataggttcagttgactttggactgaaaagttgaaactgtgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cctcaagtctctctaaaataggttcagttgactttggactgaaaagttgaaactgtgaaa 247

                                                                       
Query: 61  ccaactaaatctttcttctgttttctaagtttctttggttattgtctttgggtttttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccaactaaatctttcttctgttttctaagtttctttggttattgtctttgggtttttcat 187

                                                                       
Query: 121 ttcctgggacaaatgccatgaccaaaagcaacatggggagaaaagggtttattgaatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcctgggacaaatgccatgaccaaaagcaacatggggagaaaagggtttattgaatctt 127

                                                                       
Query: 181 atagattcttatcacgaatggaattttgagcaggaactcaaagcaggaagccaaagaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atagattcttatcacgaatggaattttgagcaggaactcaaagcaggaagccaaagaact 67

                                                                       
Query: 241 tctatgtcaatcattaatcaagaaaatgtccaacacacttaccaaaatgccaatcttatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 66  tctatgtcaatcattaatcaagaaaatgtccaacacacttaccaaaatgccaaccttatg 7

                 
Query: 301 aaggca 306
            |||||
Sbjct: 6   gaggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)