Query= MSMg01no364_j19.b1 MSMg01no364_j19.b1 CHROMAT_FILE:
MSMg01no364_j19.b1 PHD_FILE: MSMg01no364_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:47 2005
(389 letters)
>mm_chr16_89899741_89900528
Length = 788
Score = 685 bits (354), Expect = 0.0
Identities = 378/386 (97%), Gaps = 3/386 (0%)
Strand = Plus / Minus
Query: 5 gaattcactagcacttcacccggaagtttttctggtgtgccgaatgtccaagtatacaat 64
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 588 gaattcactagcacatcacccggaagtttttctggtgtgccgaatgaccaagtacacaat 529
Query: 65 aagatatcttgtcagagccgaagccatgttagagacaacagtgggactgtagtgatttct 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 528 aagatatcttgtcagagccgaagccatgttagagtcaacagtgggactgtagtgatttct 469
Query: 125 ggaccaataggaaggcgccttacgttagtacacttgcatcttttttgctgtggtcatcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggaccaataggaaggcgccttacgttagtacacttgcatcttttttgctgtggtcatcaa 409
Query: 185 cctcaattcctgtttcctgggatgccatttactgtcttggtgactgtgtcccttctgtgg 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cctcaattcctgtttcctggggtgccatttactgtcttggtgactgtgtcccttctgtgg 349
Query: 245 tttcttaagagtagagactgtgtctctgtcatttactgctcaactctggcttctagaatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttcttaagagtagagactgtgtctctgtcatttactgctcaactctggcttctagaatg 289
Query: 305 ctgtagtcctcaccaactacctctcaaatgcttagatctgcatgctgttgacagagctag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctgtagtcctcaccaactacctctcaaatgcttagatctgcatgctgttgacagagctag 229
Query: 365 cgcagg-gcttccccagggagacaga 389
||| || ||||||| |||||||||||
Sbjct: 228 cgc-ggtgcttccc-agggagacaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 788
Length adjustment: 9
Effective length of query: 380
Effective length of database: 779
Effective search space: 296020
Effective search space used: 296020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no364_j19.g1 MSMg01no364_j19.g1 CHROMAT_FILE:
MSMg01no364_j19.g1 PHD_FILE: MSMg01no364_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:47 2005
(396 letters)
>mm_chr16_89754814_89755609
Length = 796
Score = 727 bits (376), Expect = 0.0
Identities = 391/396 (98%)
Strand = Plus / Plus
Query: 1 ccagggctctgagattgacattgcaatcactgaactttgacggcaccaggttgttctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagggctctgagattgacattgcaatcactgaactttgacggcaccaggttgttctcca 260
Query: 61 taatgtgggtcagccttatgcaaccagctgaaggccttaactaagcccggagattggcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgtgggtcagccttatgcaaccagctgaaggccttaactaagcccggagattggcat 320
Query: 121 ctctaaggaggagagaagtctcccacagaccttgtcaatgtcattgagtccctgaatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctaaggaggagagaagtctcccacagaccttgtcaatgtcattgagtccctgaatctc 380
Query: 181 agattttcccagccagcactgtcacacgagccacttaagtcctctatggtgaattagtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattttcccagccagcactgtcacacgagccacttaagtcctctatggtgaattagtta 440
Query: 241 atgaaatgctgtgctgttggctgtgtttctctggagaactatggcaagaactgaccagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaaatgctgtgctgttggctgtgtttctctggagaactatggcaagaactgaccagca 500
Query: 301 tctgaaacagctgcacaaacacgtgcccaggaactggtccatctagcccgaaccagcctg 360
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tctgaaacagctgcacaaacatgtgcccaggaactggtccatctagcccaaaccagcctg 560
Query: 361 ctctccagcccacctctgcagctggcatatgccttt 396
||||||| ||||||||||||||| |||||||||||
Sbjct: 561 ctctccaccccacctctgcagctaacatatgccttt 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
