BAC Information

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BAC

Clone NameMSMg01-364M15
Chromosome16 (Build37)
Map Location 41,119,531 - 41,119,721
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364M15.T7 (MSMg01no364_m15.b1)MSMg01-364M15.TJ (MSMg01no364_m15.g1)
ACCAG472900AG472901
length787854
length of high quality
(start - end)
192 (134 - 325)120 (163 - 282)
definitionCHROMAT_FILE: MSMg01no364_m15.b1 PHD_FILE: MSMg01no364_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:02 2005CHROMAT_FILE: MSMg01no364_m15.g1 PHD_FILE: MSMg01no364_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGC
GGAATTCCCCGGATTTCCCATTGAATTCCTAATGGAATCTGTGTGATTCT
TCTCACGTGCTCAGTGGTATGACATCAAGGAGAAGTTGCCTCTCAGAGCT
GACGTTATTGGCCTCAGCTACTACTCCGAGCAGAGATTTTCAGAATTGCT
TCAATACATCTGCATTCTAGGCTTCGATAAGTAAAAGCTTGTCACTAACA
AAACCTTCGGGAAGACTGAAAGAAAGGAGCTTAGAAAATACATGGCAGCT
AGATAGAGAAAGGACCCAAGGAACCGATGGGGTTTGCAACCCCATAAGAA
GAACAACAATATGAACTAACCAGTATGTCCAGAGCTCCCTGGGACTAAAC
CACCAAAGAAAACACATGGTGCGACTCATGGCTCTAGCTACATATGTAGC
AGAGGTAGCCTAGTCAGTTTATCATGGGAGGAGAGGCCCTTGATCCTGTG
AAGGGTCTATGTTCCTGTGGAGGACAAAGTCTCCGCCTGTTATTTAGAAT
GGGTTGTATTGTTTTCATTCCGGCTCTTCTATCTTATCCTTTACCTTTTT
CTTTTTCCTATTTCTTTTTTCTTTTTTCTCCCGTCGAGTCCTCACTACAT
CTTATGCTTTTTCTTTTTTCCTTTTCCATCCCCTTGCTCCTCCGCAGCCC
CCTTACCTTCTCTCCTTTTTTTTCCTTATTTGTCTCTCCTCTCTCTCCTC
TATCCATTATTTTTTTCCCTCTTTTCTTCGTCATGCC
NCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGGAAATGACATGTGATAAGA
AGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC
AGTCAGGCCCAATTAAAGTATAAAGGCGGGTTTATAGGAGGAAGGTCTCG
GGTGAGCTCACAGATCTGACAGGAGGGAGTCAGCGAAGTCACTACACAGA
GGGAGATGTAGGGGAAGGAGAAGAGAGAGTATGGGCTTCTCCCCTTCTTC
TCTTTCTCTTTTACCGCTCCCATTTTTTTTTTTTTACCAACCACCCATTC
ATTCTTTCTTCCTTTTTTTTTTTCTTCCTTCTCTCTCTCTTTCGTTGGTC
TTTTTTTTGCTTTTCTTTTTTTTTTTCCCCCCCCCTTCCTATCTTTTCCT
TGTTTCTTTCTCCTTTCCCTTTTTCCTTCCATCCTCTTCAGCTCTTTTCT
GCCTTTTTTTCCTCTTGCTCCCCTTTTCTTTTTTTCCCCTTTCCTTTTAT
TTTCCTTCTCTTTCTGTTTCTCTCTTCCCTTCATCTTCTTTTTTCTTTTC
TCTCTTCCTTTCCTTCTCTCTTCTTCTTCTTTCCTACTTCCTTCTTCCTC
CTCCCTTCTTCTTGTCTTTCCTCTTTTCCTCTCTTTTCTTTTCTTATGTC
CTCTTTGTCCCTCGCTTTTTCTCCTCTTTTTTTCTCTCTCTTTTTTTTTT
TTATTATTTCTCTTCTTGCTTTCTCTCTCTTTGCTTCTTCCTTCTTTCTT
TTCTTCCTCTCTCTTTTCCTTTTCTCTTTTCTGCACTTTCTCTTCTTCTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_m15.b1 MSMg01no364_m15.b1 CHROMAT_FILE:
MSMg01no364_m15.b1 PHD_FILE: MSMg01no364_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:02 2005
         (192 letters)



>mm_chr16_41119331_41119922
          Length = 592

 Score =  331 bits (171), Expect = 2e-95
 Identities = 186/191 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttgcctctcagagctgacgttattggcctcagctactactccgagcagagattttcag 60
           ||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct: 201 agttgcctctcagagctgaagttattggcctcagctactactccaaggagagattttcag 260

                                                                       
Query: 61  aattgcttcaatacatctgcattctaggcttcgataagtaaaagcttgtcactaacaaaa 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aattgcttcaatacatctgcattctaggcttcaataagtaaaagcttgtcactaacaaaa 320

                                                                       
Query: 121 ccttcgggaagactgaaagaaaggagcttagaaaatacatggcagctagatagagaaagg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccgggaagactgaaagaaaggagcttagaaaatacatggcagctagatagagaaagg 380

                      
Query: 181 acccaaggaac 191
           |||||||||||
Sbjct: 381 acccaaggaac 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)