BAC Information

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BAC

Clone NameMSMg01-365D17
Chromosome16 (Build37)
Map Location 45,770,738 - 45,943,178
singlet/doubletdoublet
Overlap genePhldb2, EG667418
Upstream geneCd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10
Downstream genePlcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365D17.T7 (MSMg01no365_d17.b1)MSMg01-365D17.TJ (MSMg01no365_d17.g1)
ACCAG473238AG473239
length762749
length of high quality
(start - end)		520 (36 - 555)585 (75 - 659)
definitionCHROMAT_FILE: MSMg01no365_d17.b1 PHD_FILE: MSMg01no365_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:40 2005CHROMAT_FILE: MSMg01no365_d17.g1 PHD_FILE: MSMg01no365_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,770,738 - 45,771,254)(45,942,594 - 45,943,178)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCATG
TTTCCCAGGAGACCCTGAGATTAAAGGATACATACCTCTGAGCATCCTCC
GAGACTCAGAGTCTTTGGTCATGGTCGCCAGTGAGTGAGGGAGCACACTG
CCACAGCTATTGCTCTGCCCCAGAGGGAGGTGAGCCTGAGAGAGAGGCAG
GAGGAAATAGTTCAGGCAAGGTAAACTGCATATCAAATGTACTCAACAAC
ATGGTTGTGGCCCTATTTTCAAAGCTCCTATCTAAGGACAAAGGGTAGAG
AGACAGCTGGTCTTATGTCTCATTTCTTTTTTGATGCCAAGTGGCAAAAG
CTAATTACTCACCATCTCTCCCAAGAAGCTCTGCTGCAATCTCAGTATCG
CAGCACTTCCTCTGATAGCAACAATTCCAAAAGAGAAGATGGATGGAGAA
AAGACACTGTCCACAGTCTCGTGAGAGTGACGGGAAGCTCCCCATGCATA
AGAGTGTGGACAGCAGGTGCACAAACAGCAATGCGTGCTGCACACCATGC
AAAACCACAGGGTCCAGCTACCCATGGACAAATGCTCCGGTTGCTCTCTA
CCCCTAGCTATGCTGATACCCACTAAATCCCTTCTTTATAGCATCTTCGT
TCATTTGCTTACTTGCTCCTTCACATAGTGCCTCGGTATTTATTTGCTTC
CAATCCTTACTCTCCCCCCTATTTCATTTCTCTCCGGTGGGTTACTCTCC
GATTTTATTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTTTCTTACTCATTCATATAGCTT
CCCGTAACTTTCACTCAGCCACTGATAACCAAGGAAGCCGGAATCTATCT
CTCATCTGAGGACAAACATCCTCTCAATGGTTAAGGCAAGAACAACGTAT
CCAATAGATGTTTCCCAGAAGAAGCAGAGCTCGTCTTTATATTCCTATTT
TTTACTGCACACTGGACTGAAGAATTTTTAATTTCTGGAATTAATTAATA
TCCATTTAGAAGACTGGCCTTGAAGACTTCTATTGATAACATACTCCAGG
CTTTAAAATTGCGACATCTTTCGATAATTTCTAGAAATGACACACTACAA
GAACCTTTGGCACACAAACCGGTCTTCAGTGATATCTAAATAAATCGCAG
GGTTGGTTAACTATATGAACTACAGATGTCTTCAGTAACTCCTGGCATGG
TAAATTATATATCCCATCACCATCTATATGATTTTAGGTGATATCATCAA
CAAGATTAAATACTAAAATTTGAGGAAGTTTATCCATGGATAAAGTGACC
TTAGCAACGTTTGTTAGATTATGTGCATATCTTGCACATATGTTTAACTC
TATTTGGAAGAGATATATAATCTAACCACATCTGGTTTTGCTTAATCTTT
GGCTGGTTCCCCTAGAAAGATTAGCTGACGTCACACTTCCTCTTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_d17.b1 MSMg01no365_d17.b1 CHROMAT_FILE:
MSMg01no365_d17.b1 PHD_FILE: MSMg01no365_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:40 2005
         (520 letters)



>mm_chr16_45770535_45771454
          Length = 920

 Score =  969 bits (501), Expect = 0.0
 Identities = 513/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccatgtttcccaggagaccctgagattaaaggatacatacctctgagcatcct 63
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccatgcttaacaggagaccctgagattaaaggatacatacctctgagcatcct 263

                                                                       
Query: 64  ccgagactcagagtctttggtcatggtcgccagtgagtgagggagcacactgccacagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccgagactcagagtctttggtcatggtcgccagtgagtgagggagcacactgccacagct 323

                                                                       
Query: 124 attgctctgccccagagggaggtgagcctgagagagaggcaggaggaaatagttcaggca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attgctctgccccagagggaggtgagcctgagagagaggcaggaggaaatagttcaggca 383

                                                                       
Query: 184 aggtaaactgcatatcaaatgtactcaacaacatggttgtggccctattttcaaagctcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggtaaactgcatatcaaatgtactcaacaacatggttgtggccctattttcaaagctcc 443

                                                                       
Query: 244 tatctaaggacaaagggtagagagacagctggtcttatgtctcatttcttttttgatgcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatctaaggacaaagggtagagagacagctggtcttatgtctcatttcttttttgatgcc 503

                                                                       
Query: 304 aagtggcaaaagctaattactcaccatctctcccaagaagctctgctgcaatctcagtat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagtggcaaaagctaattactcaccatctctcccaagaagctctgctgcaatctcagtat 563

                                                                       
Query: 364 cgcagcacttcctctgatagcaacaattccaaaagagaagatggatggagaaaagacact 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cgcagcacttcctctgatagcaacaattccaaaagagaagatggatggagaaaagacact 623

                                                                       
Query: 424 gtccacagtctcgtgagagtgacgggaagctccccatgcataagagtgtggacagcaggt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtccacagtctcgtgagagtgacgggaagctccccatgcataagagtgtggacagcaggt 683

                                                
Query: 484 gcacaaacagcaatgcgtgctgcacaccatgcaaaac 520
           |||||||||| ||||||||||||||||||||||||||
Sbjct: 684 gcacaaacagtaatgcgtgctgcacaccatgcaaaac 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_d17.g1 MSMg01no365_d17.g1 CHROMAT_FILE:
MSMg01no365_d17.g1 PHD_FILE: MSMg01no365_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:40 2005
         (585 letters)



>mm_chr16_45942394_45943378
          Length = 985

 Score = 1123 bits (581), Expect = 0.0
 Identities = 584/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattttcttactcattcatatagcttcccgtaactttcactcagccactgataaccaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tattttcttactcattcatatagcttcccgtaactttcactcagccactgataaccaagg 726

                                                                       
Query: 61  aagccggaatctatctctcatctgaggacaaacatcctctcaatggttaaggcaagaaca 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aagccgaaatctatctctcatctgaggacaaacatcctctcaatggttaaggcaagaaca 666

                                                                       
Query: 121 acgtatccaatagatgtttcccagaagaagcagagctcgtctttatattcctatttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 acgtatccaatagatgtttcccagaagaagcagagctcgtctttatattcctatttttta 606

                                                                       
Query: 181 ctgcacactggactgaagaatttttaatttctggaattaattaatatccatttagaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctgcacactggactgaagaatttttaatttctggaattaattaatatccatttagaagac 546

                                                                       
Query: 241 tggccttgaagacttctattgataacatactccaggctttaaaattgcgacatctttcga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tggccttgaagacttctattgataacatactccaggctttaaaattgcgacatctttcga 486

                                                                       
Query: 301 taatttctagaaatgacacactacaagaacctttggcacacaaaccggtcttcagtgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 taatttctagaaatgacacactacaagaacctttggcacacaaaccggtcttcagtgata 426

                                                                       
Query: 361 tctaaataaatcgcagggttggttaactatatgaactacagatgtcttcagtaactcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tctaaataaatcgcagggttggttaactatatgaactacagatgtcttcagtaactcctg 366

                                                                       
Query: 421 gcatggtaaattatatatcccatcaccatctatatgattttaggtgatatcatcaacaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcatggtaaattatatatcccatcaccatctatatgattttaggtgatatcatcaacaag 306

                                                                       
Query: 481 attaaatactaaaatttgaggaagtttatccatggataaagtgaccttagcaacgtttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 attaaatactaaaatttgaggaagtttatccatggataaagtgaccttagcaacgtttgt 246

                                                        
Query: 541 tagattatgtgcatatcttgcacatatgtttaactctatttggaa 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagattatgtgcatatcttgcacatatgtttaactctatttggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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