BAC Information

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BAC

Clone NameMSMg01-367M12
Chromosome16 (Build37)
Map Location 18,882,771 - 18,883,281
singlet/doubletsinglet
Overlap geneHira
Upstream geneDgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40
Downstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367M12.T7 (MSMg01no367_m12.b1)MSMg01-367M12.TJ (MSMg01no367_m12.g1)
ACCAG475168AG475169
length743724
length of high quality
(start - end)		567 (53 - 619)517 (75 - 591)
definitionCHROMAT_FILE: MSMg01no367_m12.b1 PHD_FILE: MSMg01no367_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:02 2005CHROMAT_FILE: MSMg01no367_m12.g1 PHD_FILE: MSMg01no367_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATTTTGAGTACTTCAGGTTCATGTTTAAATGACAGTG
ATTTAAGAAGAGAAAGGAAAGGGACTGGTGAGATGGCTCAATGGGTAAGA
GCACCCGACCGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCATA
TGGTAGCTCACAACCATCTATAGGGAGATCTGACTACCTCTTCTGGAGTG
TCTGAAGAAAGCTACAGTGTACTTATATATAATAAATAAATAAATAAATC
TAAAAAAAAAGAAGAGAAAGAAAAATTGTGCTGCACGTCTCTTGTTACCT
GAAAACATAATAGGTGTACATATATTAAATATATTCTTGCAACTGTCCAG
GTCATGTTTACCAGCTGCAATTCTTTTACTTATTGTGTGACTATTGTGCA
TGGTGATATTTAATCAAGACATTAACATGAGTATAAGGTTGCAGATTTAA
GACAAGTTTGAGATCCACTAAAATTAGTTGTTGTACATCTGTCCTTCTGG
TGGCTTCATATTTTCTTTGGACCTCATAAGACATCTTAGCTCTTGAGGTA
TGACTTTTATTCTATAGAAAATTTGCCATTTTGCTAATACTGGTATGCTC
TGTGCATCCACCATTCCACTGGAACTATTGATCCCCTTCCTATTAACTTT
TGGTATAAACCTAACTGATGGAGGAACTTCTGGGTATTTAGAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGGTCACGGGGGAATCAAAGCCCT
GCTTTCTGGGAGGAACATGAAAGAGGGACCTGTACTCCAGCCTTGTGACT
TGAGTCTTCCCTGTTAGCCTGATTGGACCATCTGGGTTATATGCCTTCTC
CTGCACTGGTTACTGTTGCCTACTGGCTTATATGAATGAGAATAGATCCC
CCACTTCCCTCGGGACAGGGTGTGTAGCCCTGGCTGTCCAGGCTGGCCTG
GAACTCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTAGGATTAAAGGC
GTGTGCTACCACGCCCGGCTTGAGAATAGATACTTTAGTAAATTAAATTG
GAGTCCCACTAGAACCTGTCTACAGAAAGGTATCTCCTAAAGACAGAGGC
TTTGCCTTTGCTAGTGCCTTATTCTCAAAGAGAAAAATGGTGCCTGGAAT
ATACTAACCACTGAGTGAACACCTATGTGTACAGAGGAGAGGAGGAGATA
AAGGGTACCTGGTGGGTGGGTAACACTACCCTTGACTTGCTTCTTGTTTT
TGTTTGTCCTAGCTATGTCTTTTTTAAGATCAGATTTTCTGGTGCAATCT
GCTGTATATTGCTGTAAAAAAAAAACTATCAGGGCTTCTTAAATTTAATG
AATTCGAAATGTGTGTCTGTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_m12.g1 MSMg01no367_m12.g1 CHROMAT_FILE:
MSMg01no367_m12.g1 PHD_FILE: MSMg01no367_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:02 2005
         (517 letters)



>mm_chr16_18882571_18883487
          Length = 917

 Score =  915 bits (473), Expect = 0.0
 Identities = 504/517 (97%), Gaps = 6/517 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggtcacgggggaatcaaagccctgctttctgggaggaacatgaaagagggacctgta 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tctggtcacgggggaatcaaagccctgctttctgggaggaacacgaaagagggacctgta 260

                                                                       
Query: 61  ctccagccttgtgacttgagtcttccctgttagcctgattggaccatctgggttatatgc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctagccttgtgacttgagtcttccctgttagcctgattggaccatctgggttatatgc 320

                                                                       
Query: 121 cttctcctgcactggttactgttgcctactggcttatatgaatgagaatagatcccccac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 cttctcctgcactggttactgttgcctactggcttatatgaatgagaatagatccccccc 380

                                                                       
Query: 181 ttccctcgggacagggtgtgtagccctggctgtccaggctggcctggaactcagaaatcc 240
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ttacctcgggacagggtgtgtagccctggctgtccaggctggcctcgaactcagaaatcc 440

                                                                       
Query: 241 tcctgcctctgcctcccgagtgctaggattaaaggcgtgtgctaccacgcccggcttgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgcctctgcctcccgagtgctaggattaaaggcgtgtgctaccacgcccggcttgag 500

                                                                       
Query: 301 aatagatactttagtaaattaaattggagtcccactagaacctgtctacagaaaggtatc 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatagatactttagtaaattaaactggagtcccactagaacctgtctacagaaaggtatc 560

                                                                       
Query: 361 tcctaaagacagaggctttgcctttgctagtgccttattctcaaagagaaaaatggtgcc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tcctaaagacagaggctttgcctttgctagtgccttattctcaaagagaaaa-tggtgcc 619

                                                                       
Query: 421 tggaatatactaaccactgagtgaacacctatgtgtacagaggagaggaggagataaagg 480
           |||||||||||||||||||||||||||||||||||||||||||||     ||||||||||
Sbjct: 620 tggaatatactaaccactgagtgaacacctatgtgtacagaggag-----gagataaagg 674

                                                
Query: 481 gtacctggtgggtgggtaacactacccttgacttgct 517
           ||| |||||||||||||||||||||||||||||||||
Sbjct: 675 gtaactggtgggtgggtaacactacccttgacttgct 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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