Query= MSMg01no368_j13.b1 MSMg01no368_j13.b1 CHROMAT_FILE:
MSMg01no368_j13.b1 PHD_FILE: MSMg01no368_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:04 2005
(602 letters)
>mm_chr16_30819060_30820060
Length = 1001
Score = 1079 bits (558), Expect = 0.0
Identities = 591/602 (98%), Gaps = 1/602 (0%)
Strand = Plus / Plus
Query: 1 gaagtcatgagggaaacaagacttccaagttcacaggaactctccttcttcttcaggaac 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagtcctgagggaaacaagacttccaagttcacaggaactctccttcttcttcaggaac 260
Query: 61 tcagaagtcctgttttgctcaggacttcccacctcaggcaagcaaacctgttcctcaact 120
|| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tcggaagtcctgtttcgctcaggacttcccacctcaggcaagcaaacctgtccctcaact 320
Query: 121 ggggcatctggaaatcactcatcctacttgctcagctcaaggacaggtgctcaacgcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggcatctggaaatcactcatcctacttgctcagctcaaggacaggtgctcaacgcttc 380
Query: 181 cctcctgtctctccttccagccctgcccctctgtgatctgctttcctcccaggtggccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcctgtctctccttccagccctgcccctctgtgatctgctttcctcccaggtggccag 440
Query: 241 gaagcaagatgtttgagatcagaatgtgaagtccaagatgatccagctcgccctagaatc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagcaagatgaaggagatcagaatgtgaagtccaagatgatccagctcgccctagaatc 500
Query: 301 tgggcttcttccttctaagccctttttcttttctgctacccacccccctccccaacagaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggcttcttccttctaagcactttttcttttctgctacccacccccctccccaacagaa 560
Query: 361 aacagtagtgtcaaatactgtgctaaagacacacttccattttaagaaaaaccagtctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacagtagtgtcaaatactgtgctaaagacacacttccattttaagaaaaaccagtctgg 620
Query: 421 cctcaagacttctcattttcataaagtgaaccaaaagaaggattctgaattcccctgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcaagacttctcattttcataaagtgaaccaaaagaaggattctgaattcccctgatt 680
Query: 481 cgacgagattttttttataaggtcttcttgcaaggggagctgttttaattgaaatcttgg 540
||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 681 cgacgagattttttt-ataaggtcttcttgccaggagagctgttttaattgaaatcttgg 739
Query: 541 attttaaagtatacctggacaggcctatttcatctgggaaagccagggatgttaatacag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 attttaaagtatacctggacaggcctatttcatctgggaaagccagggatgttaatacag 799
Query: 601 aa 602
||
Sbjct: 800 aa 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1001
Length adjustment: 10
Effective length of query: 592
Effective length of database: 991
Effective search space: 586672
Effective search space used: 586672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_j13.g1 MSMg01no368_j13.g1 CHROMAT_FILE:
MSMg01no368_j13.g1 PHD_FILE: MSMg01no368_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:05 2005
(536 letters)
>mm_chr16_30992439_30993374
Length = 936
Score = 990 bits (512), Expect = 0.0
Identities = 530/536 (98%)
Strand = Plus / Minus
Query: 1 ttacagtaggggaaaaagccttcttccctccccagggctggccaagccttcttcctgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttacagtaggggaaaaagccttcttccctccccagggctggccaagccttcttcctgcag 524
Query: 61 atgtcagctgctataactcggtgccattcaggaaaattaattttcctctttgtcccagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atgtcagctgctataactcggtgccattcaggaaaattaattttcctctttgtcccagca 464
Query: 121 gccatctgccagctcagcaggaagggtccagcttccactgccgtcctcacactcctcctc 180
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 463 gccatctgccagctcagcaggaagggcccagcttccgctgccgtcctcacactcctcctc 404
Query: 181 tgtgagctgcctggtttctacagggccccagggacagggccaccaccatctgcattcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgtgagctgcctggtttctacagggccccagggacagggccaccaccatctgcattcctc 344
Query: 241 gttaccccttgtagggctttgggatgacacagtcttaaaattattttcacactagaactc 300
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gttaccccaggcagggctttgggatgacacagtcttaaaattattttcacactagaactc 284
Query: 301 aaaggaagggttcagcttgtagaatgtaactgcttctgaattcattaacgagaaatcagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaaggaagggttcagcttgtagaatgtaactgcttctgaattcattaacgagaaatcagc 224
Query: 361 tttgacaggaagatgatcatgcatgtgaccaaatactgagagaagcaacttaggggagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tttgacaggaagatgatcatgcatgtgaccaaatactgagagaagcaacttaggggagga 164
Query: 421 aagacttattttggctcatgggttcagcatgtcacatcagggaggggtctagggccaagt 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 163 aagacttattttggctcatgggttcagcatgacacatcagggaggggtctagggccaagt 104
Query: 481 tggtctgtggctgagaagcagagaaagaagattctggcactggtggggccccagcc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tggtctgtggctgagaagcagagaaagaagattctggcactggtggggccccagcc 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
