BAC Information

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BAC

Clone NameMSMg01-369A03
Chromosome16 (Build37)
Map Location 62,418,753 - 62,608,547
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1, Epha3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369A03.T7 (MSMg01no369_a03.b1)MSMg01-369A03.TJ (MSMg01no369_a03.g1)
ACCAG476099AG476100
length783775
length of high quality
(start - end)
268 (65 - 332)379 (69 - 447)
definitionCHROMAT_FILE: MSMg01no369_a03.b1 PHD_FILE: MSMg01no369_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:37 2005CHROMAT_FILE: MSMg01no369_a03.g1 PHD_FILE: MSMg01no369_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,608,281 - 62,608,547)(62,418,753 - 62,419,128)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGAAAGTCCCGACATCCAGTAAAATGTGTTTTCCCACCGTTTCCTGTT
TTAAGCATGTTTGGTCTGAATTTTCCTGACATGTTCTTATGTACCCATGT
ATGCAGTGATGGTTAGCTCTGTTAGTGTCCCACTGAGTGAGTGGATCACT
GGAAACTCTGGACTGGAAGTCATAGACGCTAAAATCTGCTTCTAGGTTTT
TCTTTCTTTTCGAACAAATAGCGTGGTTATAAACAGATCAGAGACTAATT
TACTTTGAGTTTATTTCTTTGTGTTATAAACTAATGAGCAAATGGTGGTG
ATGTTTTCTGGGGTTAGTCTTGAGATGGGGTTCTCATCCTCCAGGAAGTG
TGGATATCTTTATTGTTTATAATTTATGGTATGCACGCCTCTATTGCTTT
TACTATCATGACTTATATATGTGCTAAGGTTATATTCTCAATATTTTTGT
TCTATGTCCTATTACTGTATCCTACACTTTATTTACTTTCTTTTTGCTTT
TCTTACTTCCATTTTTTACTCCTATACATCCTACTTTTTTTGTCTACTTC
CTTTGTCTTTTTTTTTTAATCTTTTTCTCTTTTTTTTCTTCTTTCTTTTT
TCTTATTTTTCTTTTTTTTTCCTCCCTTCCTATCCTTCTTTCTTTTTTTT
CCTTCCCTTTTTTACTCATTTTCCCCCCTTTATATCCCCCTTTTTTTTCC
CTTTTTTTTCTATATTTCTTTCACTTTTTCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAACAAACTACGAAATGGGTTCTTCTTGACAA
ACTTTGAATCAAGGTGACCATGGTTCAAGCTTGTTTGTTCTTTGTTGGGA
AATACAGAAGAATTTAAAAAGAAGAGATTTAAAGGATTGGAATGCAGATA
CATTGAACAGCTTAACATTTCTCAATATTCTGCAGATATTTGATGGAAAG
AGATTTTTGTAAGTTGTAATACTAATCATCAAGCTAAAGCATGTGAATAT
ACATGTGAATGTGAATTACATGTGAATATACATTTGATTACTACACAAGA
GCTACGTCAAGGGTATACCTGACAGTCTTTATAACTGACCCGGTCTTACA
TGGACTGAGAAGTTTCTCTATCTTTTGTATATAAAGTTCAAATCTATTAG
GCATCTATATTTGGAAAGAATATCTTGACTGGGGTCAATGAAGTGTCATG
AGATGGTATTCTAAACCAAAAGGACTATGGTAGAGGAAGAGACAGCTGAT
ATTGCTTTCTCAGGTCCACATAAAGAGCTTATCGACTCCTGAAGAAGTTG
TAATCTGCCACCCCCAAAATAAAATTTCCGGAAAATCATTGCTTAGGCAC
TCTATGTTTTTTTGTCCTTGTCGGCTTATAAATTGTGTTCCAAATAAATT
TTAATTTCCCGTGGTAAAATTCCTCCTATCCCCTTGCCATTTTCCCTATC
CTCACTCCATATTGTTATCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_a03.b1 MSMg01no369_a03.b1 CHROMAT_FILE:
MSMg01no369_a03.b1 PHD_FILE: MSMg01no369_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:37 2005
         (268 letters)



>mm_chr16_62608081_62608748
          Length = 668

 Score =  470 bits (243), Expect = e-137
 Identities = 261/267 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catccagtaaaatgtgttttcccaccgtttcctgttttaagcatgtttggtctgaatttt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 catccagtaaaaggtgttttcccaccgtttcctgttttaagcatgtttggtctgaatttt 408

                                                                       
Query: 61  cctgacatgttcttatgtacccatgtatgcagtgatggttagctctgttagtgtcccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cctgacatgttcttatgtacccatgtatgcagtgatggttagctctgttagtgtcccact 348

                                                                       
Query: 121 gagtgagtggatcactggaaactctggactggaagtcatagacgctaaaatctgcttcta 180
           ||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 347 gagtgagtggatcacaggaaactctgtactggaagtcagagacgctaaaatctgcttcta 288

                                                                       
Query: 181 ggtttttctttcttttcgaacaaatagcgtggttataaacagatcagagactaatttact 240
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 287 ggtttttctttcttttcgaacaaatagcgtggctgtaaacagatcagagactaatttact 228

                                      
Query: 241 ttgagtttatttctttgtgttataaac 267
           |||||||||||||||||||||||||||
Sbjct: 227 ttgagtttatttctttgtgttataaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no369_a03.g1 MSMg01no369_a03.g1 CHROMAT_FILE:
MSMg01no369_a03.g1 PHD_FILE: MSMg01no369_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:37 2005
         (379 letters)



>mm_chr16_62418553_62419331
          Length = 779

 Score =  712 bits (368), Expect = 0.0
 Identities = 374/376 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaaactacgaaatgggttcttcttgacaaactttgaatcaaggtgaccatggttcaa 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aaacaaactacgaaatgggttcttcttgacaaactttgaaccaaggtgaccatggttcaa 260

                                                                       
Query: 61  gcttgtttgttctttgttgggaaatacagaagaatttaaaaagaagagatttaaaggatt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgtttgttgtttgttgggaaatacagaagaatttaaaaagaagagatttaaaggatt 320

                                                                       
Query: 121 ggaatgcagatacattgaacagcttaacatttctcaatattctgcagatatttgatggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatgcagatacattgaacagcttaacatttctcaatattctgcagatatttgatggaa 380

                                                                       
Query: 181 agagatttttgtaagttgtaatactaatcatcaagctaaagcatgtgaatatacatgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagatttttgtaagttgtaatactaatcatcaagctaaagcatgtgaatatacatgtga 440

                                                                       
Query: 241 atgtgaattacatgtgaatatacatttgattactacacaagagctacgtcaagggtatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgaattacatgtgaatatacatttgattactacacaagagctacgtcaagggtatac 500

                                                                       
Query: 301 ctgacagtctttataactgacccggtcttacatggactgagaagtttctctatcttttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgacagtctttataactgacccggtcttacatggactgagaagtttctctatcttttgt 560

                           
Query: 361 atataaagttcaaatc 376
           ||||||||||||||||
Sbjct: 561 atataaagttcaaatc 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)