Query= MSMg01no372_c01.b1 MSMg01no372_c01.b1 CHROMAT_FILE:
MSMg01no372_c01.b1 PHD_FILE: MSMg01no372_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:48 2005
(625 letters)
>mm_chr16_69045664_69046685
Length = 1022
Score = 973 bits (503), Expect = 0.0
Identities = 587/617 (95%), Gaps = 7/617 (1%)
Strand = Plus / Plus
Query: 5 gaattcacatgta--taccaaagtaaaatcatgagctttacagatacatagattaaactg 62
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatgtaaata--aaagtaaaatcatgagctttacagatacatagattaaactg 262
Query: 63 taataggtaatgttgactaagataacccatactcggaaaaacaagtgttagatgaccttg 122
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 caataggtaatgttgactaagataacccatactcagaaaaacaagtgttagatgaccttg 322
Query: 123 cttatgaggatttaaactccatcctttgcggttcaaatgcacagcctcaagtaactttag 182
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 323 cttatgaggacttaaactccatcctttgaggttcaaatgcacagcctcaagtaacttcag 382
Query: 183 gaaccagaaaaggataaaggaaccattgcaagtatctttgtaggaaagagaaggaaatag 242
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 gaaccagaaaagaataaaggaaccattgcaggtatctttgtaggaaagagaaggaaatag 442
Query: 243 ctgtttatataataatcttaaagaaaaattatatagctgggcttccctgactagggtttg 302
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 443 ctgtttatataataatcttaaagaaaaattagaaagctgggcttccctgactagggttta 502
Query: 303 ggagttagataaagacacattaaggtaggaccagggtaaaataaaaagatttcatttttt 362
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 ggagttagataaagacaaattaaggtaggaccagggtaaaataaaa-gatttcatttttt 561
Query: 363 tttctctaaacagaacaaaatgaccttatgaatgtgtacatgttttcattatgtgtttat 422
| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 562 t--ctttaaacggaacaaaatgaccttatgaaggtgtacatgttttcattatgtgtttat 619
Query: 423 gtcttcatggacatctatggggctttcgattcattttccttgtaaaaagtctctatttat 482
|||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||
Sbjct: 620 gtcttcatggacatctatggagcttttgattcatttcccttataaaaagtctctatttat 679
Query: 483 gggagaaatacaaattaaaagtacttttatgaatcactcagttagaatgactatcataaa 542
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 680 gggagaaatacaaattaaaagtacttttatgaatcactcaattaaaatgactatcataaa 739
Query: 543 gaactctcatagcgaatgttgataatgatgtagaaaagagggaacacttcatcactgctc 602
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||
Sbjct: 740 gaactctcatagcgaatgttgataaggatgtggaaaagagggaacacttcatcattgctc 799
Query: 603 atgagaatgaagattag 619
|||||||||||||||||
Sbjct: 800 atgagaatgaagattag 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1022
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1012
Effective search space: 622380
Effective search space used: 622380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_c01.g1 MSMg01no372_c01.g1 CHROMAT_FILE:
MSMg01no372_c01.g1 PHD_FILE: MSMg01no372_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:48 2005
(643 letters)
>mm_chr16_69205642_69206685
Length = 1044
Score = 826 bits (427), Expect = 0.0
Identities = 501/527 (95%), Gaps = 9/527 (1%)
Strand = Plus / Minus
Query: 121 gtaaatctacccactacagtggaataccaaacatctgaatatattttcagaacacaaaat 180
||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 1044 gtaaatctacctactacagtgaaataccatacatctgaatatattttcagaacacaaaat 985
Query: 181 tatcttagtgtgtctaaaacaggaaaggggtctcttccatattggcaatgttgaaggaga 240
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 984 aatcttagtgggtctaaaacaggaaaggggtctcttgcatattggcaatgttgaaggaga 925
Query: 241 agtttaatatgatccaaacaaactgtaaggaactctcagaa-attacaataataaaaata 299
||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||
Sbjct: 924 agtttaatatgatccaaacaaactgaaaggaactctca-aatattgcaataataaaaata 866
Query: 300 tgtgaaataaaataaaaataatgagaatcagtatatgcataaaaaaatagaactgataat 359
||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct: 865 tgtgaaataaaataaaaataaagagaatcagtacatgca-caaaaaatagaactgataat 807
Query: 360 aatttgttttat-gaagaatgctgtgatactttgaataaaatgtaaagatt---aagaag 415
|||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 806 aatttg-tttatggaag-atgctgtgatactttgaataaaatgtaaagattaagaagaag 749
Query: 416 aagataagattagataaacttattttaaaatattgtaattgataacagcatagcagtcct 475
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 748 aagataagatttgataaactcattttaaaatattgtaattgataacagcatagcagtctt 689
Query: 476 agacaccactgtctgtcctttgtgaaaactaacttctaattcaagataacttacataact 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agacaccactgtctgtcctttgtgaaaactaacttctaattcaagataacttacataact 629
Query: 536 attaatacatttcaatatatataaataatacacaaacatatgcaacactttgcatgcata 595
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 628 attaatacatttcaacatatataactaatacacaaacatatgcaacactttgcatgcata 569
Query: 596 ttatataaaacacacacatatatagttttatttgcctatatacatac 642
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 568 ttatataaaacacacacatatatagttttatttgcatatatacatac 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
