BAC Information

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BAC

Clone NameMSMg01-373A14
Chromosome16 (Build37)
Map Location 82,304,436 - 82,430,825
singlet/doubletdoublet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260, EG545172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373A14.T7 (MSMg01no373_a14.b1)MSMg01-373A14.TJ (MSMg01no373_a14.g1)
ACCAG479160AG479161
length714703
length of high quality
(start - end)		597 (13 - 609)482 (64 - 545)
definitionCHROMAT_FILE: MSMg01no373_a14.b1 PHD_FILE: MSMg01no373_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:55 2005CHROMAT_FILE: MSMg01no373_a14.g1 PHD_FILE: MSMg01no373_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,304,436 - 82,305,023)(82,430,344 - 82,430,825)
sequence
ACTATTTCCAGAGGATCCGCGGAATTCACCACTATGGCTATTTTCTAGTT
TCCTGACTCCTATAGGAACATCACTTTAGCTGCACATAGCTACAGATTCC
GAGTTAGTGTTTATATTCAACCTAGGGAGAAGAGGGTGCTTCTCTCTGTG
TGTGGATCATCTGTCTCCAAATGATTATTTACAGCACAATTTATTTATGT
ATAACTTTTATAATTTTATTTTTTTCAGAAAATGTTCCAGTGTGCATTGC
ATAATTTTTTTTATTATTATCCATCCAGGATAGTGACCTTGGGCTGTTTT
TATAGTCTGGGTATTGTGAATAAACAGGTATGCACTCGGCAAGATAAAGC
TTGTATCTATATAGTAGGTTACAGAGTCTTTTGGCAATATTTTTTGTAGA
GGTATAGCTTAATAATATGGTAAATACCTTTCTATTTTGAGGAATATCCA
CACTGGTTACTATAGTAAATGCTCCAGTTTCCATTTTTACCCGCAGTGAT
CAGAAATCTTCATACCCACACCCATTTGATTTCACTTGCTTGTAGTTTGA
GCCATTCTAACTAGAAAAACAAGGAATACAAAATCGGTTTAAAATCCCAT
TTTTTCTTAGAGCTTAGAATTTTGAACTTAATAAGGTATTTCTTTAACAC
TATTATTTTTATTTTGAGCATTGATTTTATTTTATGTTCCCATTTTTAAA
TTTTTTTGGGTATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTAGCTCTGCATTTTAAACAGGCAATCTAAACATGTT
CTCAGTGGATAAGAATAAGCCCTGCAGAACTACTTTCTAAACTTTGTATT
TTTTTCCACAGAAACTCAACTTCAAAGATATTCTGAAAACACCATAAAGT
TTCAAACTACACAGTGCCTGCAAACTTTGCACATGGCTACCATTGACATC
AATCAGAATTCTATATGCATGGACTCAGGGCAAAGCATAACCTTTTATAT
GGTCGACTATATGTTTGAAATGGCGACAAAAATGTCTGAGACTTCAAACA
CACTGCTGACTTTACAGTTTCAAAGGACACTTAGTTTTAAGAACCAAAGC
AATGGTAAGTATGTTGGATTGTAGTGCCTTAATTTAAATTTTAAAAACAT
CAGAAGGATTTTCTTTGCAATTTAAAAGTCAAAATTAAATTACCAGAAAA
CATCTACACAGTTGATTATGTGTTGATGATTTATGTGTGTTTTTTGAATG
TATTTTTATTTGGTTTGTTCCCCAAACTTTAAATGACTCCCTCAAAACTA
TCATACACTACCCTATATTTTTTTATCTCGTCACACCATCTCTTTTTTTT
TCACGCCCTATTTTCCCACCTCTTTAATCCACACCTTCTTTACCCTGTCC
TAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_a14.b1 MSMg01no373_a14.b1 CHROMAT_FILE:
MSMg01no373_a14.b1 PHD_FILE: MSMg01no373_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:55 2005
         (597 letters)



>mm_chr16_82304227_82305223
          Length = 997

 Score = 1114 bits (576), Expect = 0.0
 Identities = 585/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattcaccactatggctattttctagtttcctgactcctataggaacatcactttagct 69
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcaccactatggatattttctagtttcctgactcctataggaacatcactttagct 269

                                                                       
Query: 70  gcacatagctacagattccgagttagtgtttatattcaacctagggagaagagggtgctt 129
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 270 gcacatagctacagattccgagttagtatttatattcaacctagggagaagaggatgctt 329

                                                                       
Query: 130 ctctctgtgtgtggatcatctgtctccaaatgattatttacagcacaatttatttatgta 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctctctgtgtgtggatcatctgtctccaaatgattatttacagcacaatttatttatgta 389

                                                                       
Query: 190 taacttttataattttatttttttcagaaaatgttccagtgtgcattgcataattttttt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 taacttttataattttatttttttcagaaaatgttccagtgtgcattgcataattttttt 449

                                                                       
Query: 250 tattattatccatccaggatagtgaccttgggctgtttttatagtctgggtattgtgaat 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tattattatccatccaggatagtgaccttgggctgtttttatagtctgggtattgtgaat 509

                                                                       
Query: 310 aaacaggtatgcactcggcaagataaagcttgtatctatatagtaggttacagagtcttt 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaacaggtatgcactcggcaagataaagcttgtatctatatagtaggttacagagtcttt 569

                                                                       
Query: 370 tggcaatattttttgtagaggtatagcttaataatatggtaaatacctttctattttgag 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tggcaatattttttgtagaggtatagcttaataatatggtaaatacctttctattttgag 629

                                                                       
Query: 430 gaatatccacactggttactatagtaaatgctccagtttccatttttacccgcagtgatc 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaatatccacactggttactatagtaaatgctccagtttccatttttacccgcagtgatc 689

                                                                       
Query: 490 agaaatcttcatacccacacccatttgatttcacttgcttgtagtttgagccattctaac 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agaaatcttcatacccacacccatttgatttcacttgcttgtagtttgagccattctaac 749

                                                           
Query: 550 tagaaaaacaaggaatacaaaatcggtttaaaatcccattttttctta 597
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tagaaaaacaaggaatacaaaatcggtttaaaatcccattttttctta 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_a14.g1 MSMg01no373_a14.g1 CHROMAT_FILE:
MSMg01no373_a14.g1 PHD_FILE: MSMg01no373_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:55 2005
         (482 letters)



>mm_chr16_82430144_82431025
          Length = 882

 Score =  901 bits (466), Expect = 0.0
 Identities = 478/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagctctgcattttaaacaggcaatctaaacatgttctcagtggataagaataagccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctagctctgcattttaaacaggcaatctaaacatgttctcagtggataagaataagccct 623

                                                                       
Query: 61  gcagaactactttctaaactttgtatttttttccacagaaactcaacttcaaagatattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcagaactactttctaaactttgtatttttttccacagaaactcaacttcaaagatattc 563

                                                                       
Query: 121 tgaaaacaccataaagtttcaaactacacagtgcctgcaaactttgcacatggctaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 562 tgaaaacaccataaagtttcaaactacacagtgcctgcaaactttgcacatggctcccat 503

                                                                       
Query: 181 tgacatcaatcagaattctatatgcatggactcagggcaaagcataaccttttatatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgacatcaatcagaattctatatgcatggactcagggcaaagcataaccttttatatggt 443

                                                                       
Query: 241 cgactatatgtttgaaatggcgacaaaaatgtctgagacttcaaacacactgctgacttt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cgacaatatgtttgaaatggcgacaaaaatgtctgagacttcaaacacactgctgacttt 383

                                                                       
Query: 301 acagtttcaaaggacacttagttttaagaaccaaagcaatggtaagtatgttggattgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acagtttcaaaggacacttagttttaagaaccaaagcaatggtaagtatgttggattgta 323

                                                                       
Query: 361 gtgccttaatttaaattttaaaaacatcagaaggattttctttgcaatttaaaagtcaaa 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 322 gtgccttaatttaaattttaaaaacctcagaaggattttctttgcaatttaaaagtcaaa 263

                                                                       
Query: 421 attaaattaccagaaaacatctacacagttgattatgtgttgatgatttatgtgtgtttt 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 262 attaaattaccagaaaacatctacacagttgattatgtgttgattatttatgtgtgtttt 203

             
Query: 481 tt 482
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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