Query= MSMg01no373_p16.b1 MSMg01no373_p16.b1 CHROMAT_FILE:
MSMg01no373_p16.b1 PHD_FILE: MSMg01no373_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:03 2005
(597 letters)
>mm_chr16_86203163_86204159
Length = 997
Score = 1087 bits (562), Expect = 0.0
Identities = 583/590 (98%)
Strand = Plus / Plus
Query: 8 gaattccacacaattacacttgaatggttttaggcaacatatttatagtttaaactttag 67
||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaatttcacacaaagatacttgaatggttttaggcaacatatttatagtttaaactttag 267
Query: 68 agtttgtattttctttccttttcctttttcactgctgtaagtctgtcactggttggaatt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agtttgtattttctttccttttcctttttcactgctgtaagtctgtcactggttggaatt 327
Query: 128 tgtaatttatggcgatgcagcaatcccaggttcttcatcctcaagtgatcttttccccct 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtaatttatggcgatgcagcaatcccaggttcttcatcctcaagtgatcttttccccct 387
Query: 188 gagaacttacactgcttgataaaatacacctgggaatgaattgatgacatctcagaaaaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gagaacttacactgcttgataaaatacacctgggaatgaattgatgacatctcagaaaaa 447
Query: 248 accatgcaaaggttctaagcatgctcttcatggtatggccctgaaaaattgtaaacatct 307
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 448 accatgcaaaggttctaagcatgctcttcatgggatggccctgaaaaattgtaaacatct 507
Query: 308 ttcagaggtcaataaaaatgttctgaagaataaatgagtgaattgtatatcagtactcta 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttcagaggtcaataaaaatgttctgaagaataaatgagtgaattgtatatcagtactcta 567
Query: 368 gacatccaacaaagacatggacttcatgcttaaaaacaaaacaaaacaaaacaaaatact 427
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 568 gacatccaacaaagacatggacttcatgtttaaaaacaaaacaaaacaaaacaaaatact 627
Query: 428 gtagtttcttttcacttagggctttttgaaaagtaaataaatacagtattacattaagct 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtagtttcttttcacttagggctttttgaaaagtaaataaatacagtattacattaagct 687
Query: 488 agtatatcagacttaaaataaatatgcattattcacctgaccagctactgttgtataact 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agtatatcagacttaaaataaatatgcattattcacctgaccagctactgttgtataact 747
Query: 548 taagagggtgcctatatttggaagttcctcatctgtaattctcgctcaag 597
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 748 taagagggtgcctatatttggaagttcctcatctgtaattctcgttcaag 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_p16.g1 MSMg01no373_p16.g1 CHROMAT_FILE:
MSMg01no373_p16.g1 PHD_FILE: MSMg01no373_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:03 2005
(573 letters)
>mm_chr16_86399370_86400340
Length = 971
Score = 1062 bits (549), Expect = 0.0
Identities = 567/573 (98%), Gaps = 2/573 (0%)
Strand = Plus / Minus
Query: 1 cactcttggaaaatatcctaaagaaacattgtctcagctttgtcgggagctgcagaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cactcttggaaaatatcctaaagaaacattgtctcagctttgtcgggagctgcagaaatc 712
Query: 61 agtgctgagacctcacaatagtgctggtgtttttttctagaagattaaagtcaaaaaata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 agtgctgagacctcacaatagtgctggtgtttttttctagaagattaaagtcaaaaaatg 652
Query: 121 aaataaaacaaaaacccaatgaattaggaataaattcatacaacttgttatataccttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaataaaacaaaaacccaatgaattaggaataaattcatacaacttgttatataccttgt 592
Query: 181 taaaaatgatgaatcgttgcttcatgaacaaatacaactgcatctaatgctcacattagt 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 taaaaatgatgaatcattgcttcatgaacaaatacaactgcatctaatgctcacattagt 532
Query: 241 taataaatcttaagccataactgaaggaataaattaaaaaaaacagtttacaaatactga 300
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 531 taataaatcgtaagccat-actgaaggaataaa-taaaaaaaacagtttacaaatactga 474
Query: 301 aataaaagagaataaggctacttggaaatggatggctaattattctctgcctcctgtcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aataaaagagaataaggctacttggaaatggatggctaattattctctgcctcctgtcaa 414
Query: 361 tgatttctcttgatgaagtgttcactcatttactagggagatcatgtcataaagagggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgatttctcttgatgaagtgttcactcatttactagggagatcatgtcataaagagggac 354
Query: 421 aagagggtccagttagtcacagtcatgagcaggaagccacacatacacctctgctattgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aagagggtccagttagtcacagtcatgagcaggaagccacacatacacctctgctattgc 294
Query: 481 tccttgtcagaatgtactggcttgtactcagtcttaaaagttgagaaattggaaaatctt 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tccttgtcagaatgtactggtttgtactcagtcttaaaagttgagaaattggaaaatctt 234
Query: 541 gttaaaattagcctcatggcacttacactggag 573
|||||||||||||||||||||||||||||||||
Sbjct: 233 gttaaaattagcctcatggcacttacactggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 971
Length adjustment: 10
Effective length of query: 563
Effective length of database: 961
Effective search space: 541043
Effective search space used: 541043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
