BAC Information

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BAC

Clone NameMSMg01-374N07
Chromosome16 (Build37)
Map Location 65,563,495 - 65,798,969
singlet/doubletdoublet
Overlap geneEG383186
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b
Downstream geneVgll3, LOC664846, LOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374N07.T7 (MSMg01no374_n07.b1)MSMg01-374N07.TJ (MSMg01no374_n07.g1)
ACCAG480530AG480531
length767764
length of high quality
(start - end)		479 (75 - 553)490 (75 - 564)
definitionCHROMAT_FILE: MSMg01no374_n07.b1 PHD_FILE: MSMg01no374_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:12 2005CHROMAT_FILE: MSMg01no374_n07.g1 PHD_FILE: MSMg01no374_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,798,491 - 65,798,969)(65,563,495 - 65,563,984)
sequence
TTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTTAGCTGAGAGATTTAAGCTGCTATTACAATGTTACT
ATATTTGCTACCAATTATCTTTCTTTTCTATCTTTTATCCCCTCCCTCCC
ATATTCCATCTTCTTCTTCCTCCCCTCCTTCCTTACTCCTTCCTCTCTCC
TTCCTCTCCTTCTTCCTTCCTTCTTTCCTTCCTTCTCTTTCCAAAAACAC
TAATGTAGAACATTTTGAGAGATTAAATTTTCTTTTGACGAAAGTGTGAT
TCAGCTCATATTTCCTCTGGACTTGTGTAGATAGCCTTGGGACACACTTT
TGCTCTGACATTGGGAAGAGTCACATTACAGAATCTGAATGTTAATGCTG
AATTTTTCTGCCAATTTAATTTCTTTTGAATAATTTCAGAAGTGCCTTTC
AGTGATTTTTTTCCAGAATCTGCATCTTCAGATTAGATTCAAAATTTGAA
AGTTAGAATTCAATCTTGGATCTCTTTTGAAATTTATATGCCATTACAGT
ACTAGAGGCACATTTGTACATCACCTCTACCTTCATAAGAACCAAAAGGA
CTTCACACTTGATTAAAGGATATGAGAGAAGCGCCATACTATTATTACCC
ATGTGCTTGATTCCCCATATGTGAGCCTAATTTTTTTTTCCCAATTTAAA
TATGTATGGATCAAATGGCTCTTTTGGTGTGGCAATGGATAGCCGGTTTA
AACTCTCTTTGTTTATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAATGCCACACTATTGTTTAATGCTC
CTGACTTGGAACAAGAAAGGCTGCTGATACTTGTGTTCTTGCTTAGAACC
CAACTTGTTTAGGTGTCACATAAATGCGGAGGAAAAGACACACAGTCACA
CACCAAAAAATGGCTGCACAGTGAATCTATGAAATTGCTACATAGCACTT
GGTTGATATTTAATACCAAAAGTCTCCATACCCTGTAAAAAGGACAGTCA
TTTAAGTTCTTGACTGTATAAAATAAATATGGAAATCATAATCGTTCATG
ACTATGTATACATCTTCCTGATTAATGTATTATTTCTATTTACAATCATA
ATTATGTCTTGAACATATTCCCCTGCGAATCCCCTGTTTAGCAGCAATGC
CTTTCATGGGATTACAAAGCAAAACAGTGACAGGCAGGGGGAGCATTTAA
TCCCAGCACTTTGAAGGCAAAAAAGGTAGGCAGATCGCTGTGAGTTCGAG
GCCAGACTGATCTACATAGAGAGTTCCAGAATAGTCAAGGCTACACAGAC
AAACCCAGTCTTCGAAATACTACTACAAAAACCAAGATACCCAAAATGCT
GTAACCCCGAGATGTGTTAATTCCATGGTATAACTTATTGAATATTTGGC
CGGGTCCCGGTTCCATTTTTAACACCTAATAATTACGGATAAGAAATACC
TTTCTTTTCCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_n07.b1 MSMg01no374_n07.b1 CHROMAT_FILE:
MSMg01no374_n07.b1 PHD_FILE: MSMg01no374_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:12 2005
         (479 letters)



>mm_chr16_65798130_65799008
          Length = 879

 Score =  911 bits (471), Expect = 0.0
 Identities = 477/479 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaagctgctattacaatgttactatatttgctaccaattatctttcttttctatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 atttaagctgctattacaatgttactatatttgctaccaattatctttcttttctatctt 781

                                                                       
Query: 61  ttatcccctccctcccatattccatcttcttcttcctcccctccttccttactccttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttatcccctccctcccatattccatcttcttcttcctcccctccttccttactccttcct 721

                                                                       
Query: 121 ctctccttcctctccttcttccttccttctttccttccttctctttccaaaaacactaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ctctccttcctctccttcttccttccttctttccttccttctctttccaaaaacactaat 661

                                                                       
Query: 181 gtagaacattttgagagattaaattttcttttgacgaaagtgtgattcagctcatatttc 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gtagaacatcttgagagattaaattttcttttgacgaaagtgtgattcagctcatatttc 601

                                                                       
Query: 241 ctctggacttgtgtagatagccttgggacacacttttgctctgacattgggaagagtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctctggacttgtgtagatagccttgggacacacttttgctctgacattgggaagagtcac 541

                                                                       
Query: 301 attacagaatctgaatgttaatgctgaatttttctgccaatttaatttcttttgaataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 540 attacagaatctgaatgttaatgctgaatttttctgccaatttaatttcctttgaataat 481

                                                                       
Query: 361 ttcagaagtgcctttcagtgatttttttccagaatctgcatcttcagattagattcaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttcagaagtgcctttcagtgatttttttccagaatctgcatcttcagattagattcaaaa 421

                                                                      
Query: 421 tttgaaagttagaattcaatcttggatctcttttgaaatttatatgccattacagtact 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tttgaaagttagaattcaatcttggatctcttttgaaatttatatgccattacagtact 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_n07.g1 MSMg01no374_n07.g1 CHROMAT_FILE:
MSMg01no374_n07.g1 PHD_FILE: MSMg01no374_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:12 2005
         (490 letters)



>mm_chr16_65563295_65564184
          Length = 890

 Score =  940 bits (486), Expect = 0.0
 Identities = 489/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatgccacactattgtttaatgctcctgacttggaacaagaaaggctgctgatacttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgccacactattgtttaatgctcctgacttggaacaagaaaggctgctgatacttgt 260

                                                                       
Query: 61  gttcttgcttagaacccaacttgtttaggtgtcacataaatgcggaggaaaagacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcttgcttagaacccaacttgtttaggtgtcacataaatgcggaggaaaagacacaca 320

                                                                       
Query: 121 gtcacacaccaaaaaatggctgcacagtgaatctatgaaattgctacatagcacttggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcacacaccaaaaaatggctgcacagtgaatctatgaaattgctacatagcacttggtt 380

                                                                       
Query: 181 gatatttaataccaaaagtctccataccctgtaaaaaggacagtcatttaagttcttgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatttaataccaaaagtctccataccctgtaaaaaggacagtcatttaagttcttgac 440

                                                                       
Query: 241 tgtataaaataaatatggaaatcataatcgttcatgactatgtatacatcttcctgatta 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tgtataaaataaatatggaaatcataatcattcatgactatgtatacatcttcctgatta 500

                                                                       
Query: 301 atgtattatttctatttacaatcataattatgtcttgaacatattcccctgcgaatcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtattatttctatttacaatcataattatgtcttgaacatattcccctgcgaatcccc 560

                                                                       
Query: 361 tgtttagcagcaatgcctttcatgggattacaaagcaaaacagtgacaggcagggggagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttagcagcaatgcctttcatgggattacaaagcaaaacagtgacaggcagggggagc 620

                                                                       
Query: 421 atttaatcccagcactttgaaggcaaaaaaggtaggcagatcgctgtgagttcgaggcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttaatcccagcactttgaaggcaaaaaaggtaggcagatcgctgtgagttcgaggcca 680

                     
Query: 481 gactgatcta 490
           ||||||||||
Sbjct: 681 gactgatcta 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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