BAC Information

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BAC

Clone NameMSMg01-374O04
Chromosome16 (Build37)
Map Location 41,340,399 - 41,490,754
singlet/doubletdoublet
Overlap geneEG667450
Upstream genenone
Downstream geneLsamp, Gap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374O04.T7 (MSMg01no374_o04.b1)MSMg01-374O04.TJ (MSMg01no374_o04.g1)
ACCAG480572AG480573
length916778
length of high quality
(start - end)		179 (68 - 246)539 (77 - 615)
definitionCHROMAT_FILE: MSMg01no374_o04.b1 PHD_FILE: MSMg01no374_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:16 2005CHROMAT_FILE: MSMg01no374_o04.g1 PHD_FILE: MSMg01no374_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,340,399 - 41,340,576)(41,490,219 - 41,490,754)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTGCAATTTGCTTTTACAAAGAATTGTTGTAGAACTAGATCTGGT
AAACTTGCTTAATCTTTGTGTACAGCAAATTGGAAGAATGTAGAGGGAAA
GGAAGAAAGTAAAACTGAAGTTTACTAACATATCTTCTTAATATGTTTGC
TTTGGTTTAGTTCTAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTCTTTCTTCTTCTCTTCTTTTTCTTTCTTTTTCTTTTCTCTTTTTTCT
CTCTCTCTTTTTCACTCCTCTTTTTTTTTTTTTTCTTCGATTTTCCTCTT
CTCTCTCTCTTATGCCCCCCCCCTTCTCTTTTTCCCTCCCCATTCTCTAT
CTCTCTTCTTTTTCTTCTTTCTCTCCCCCCCCCCCCTAGTTCTCTTTCCG
CGCCTCTACTCCTACTCTGTCCCGTTTTCTCCCGCTCGATCTCTTTCCCT
AGTTCGTTATCCTTTCCTCTTCTCCGCCTTCTTCTTCTTCTACTTACCCC
AATTCTTTTCTGTCTCGTCCTCTTATCCCTCGACTTCTCCTCCTCTTCCT
CCTCTCGCTTTTTTCTTCCCTTTCACTCTTCTTTTTCGCTACTTCTCCTT
TCCCTTCCTTTCCTCTTCTTCCTCGCCCCTTTCTTTCTCTCATCCTATCG
CCTACCATTGACTCTTCTTTCTATCTCATTTTATTTCTTTCCCTATTCCG
TTTCCCTTCTCATTTACCTACTTAGTCCTCCTACGCCTTGTCTTCTTTTC
TTGCCCGGCTCATTTCTTATCTCCCCTTTTCTTTTCCGCCTTCTCACTTT
ATTATCCTTTTGTGTTAGCCCTCTGTCACTTATATTCTCCCATCCATTTC
CTCTCTTCTTTTATCG

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAAAATCAAAAAATTTCATGTTT
ATAACTATTTTTAAAATAGGTTAAGTATCTAGATTGAGCAAAACATGCTG
AAAATAGAATGCGGTACACTAATGTAAATAGAAATGAATGAATTAGTGGT
TATTCAGTAAACAAGCAGCAGGGACAGTCCAGGATCTCTCCAAGATGCAA
GAGATGTCTGCTCTCTTCTATGCTTGTGAAAGAAACAATGTTGCAATGCA
GTGTTGTCCAGTAACTGGGTGGCCTTATCAGCAGCATGGGAATTGGACAA
AATAGACTTGTATCTAGTAAGTCTAGTCTAGTATATTGAGTAGGTCTTAC
ATACCTTGCATTAAGCTATACATTCCTACATACAAACGTGGGCTTTCCCA
GACACCTTTGTGAAAATCCCTGTAAGGGAAAGGCAGTAATACTATCAGTA
CAAAGAGCTGAATTGCAGCTTCATGGTAAACTAGAAATAGACCTATGTTT
CTCTAATGTGCGAGGGCAATTTTACAAATTTACAAATTTTACTCTTTACC
ATATATATATATGATATGGGACATATGTATGCATGTTCCATCTCCTCTCC
CCTCCCCTTACTCGCTCTTTTTTCCCCTTCTTTCCTCCTCTTCCTCCTCC
CCCCCCTTTTACTCCTCCTCCCGTCCGCTTACCCATCCTTTTACTTTTCC
TTCTTCTTGTTCTTCCCCCCTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_o04.b1 MSMg01no374_o04.b1 CHROMAT_FILE:
MSMg01no374_o04.b1 PHD_FILE: MSMg01no374_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:16 2005
         (179 letters)



>mm_chr16_41340199_41340777
          Length = 579

 Score =  321 bits (166), Expect = 1e-92
 Identities = 175/178 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacaaagaattgttgtagaactagatctggtaaacttgcttaatctttgtgtacagca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tttacaaagaattgttgtagaactcgatctggtaaacttgcttaatctttgtgtacagca 260

                                                                       
Query: 61  aattggaagaatgtagagggaaaggaagaaagtaaaactgaagtttactaacatatcttc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattggaagaatgtagagggaaaggaagaaagtaaaactgaagtttactaacatatcttc 320

                                                                     
Query: 121 ttaatatgtttgctttggtttagttctagaatgtgtgtgtgtgtgtgtgtgtgtgtgt 178
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ttaatatgtttgctttggtttagttcttgaatgtgtgtgtgtgtgtgtgtgtgtgtgt 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no374_o04.g1 MSMg01no374_o04.g1 CHROMAT_FILE:
MSMg01no374_o04.g1 PHD_FILE: MSMg01no374_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:16 2005
         (539 letters)



>mm_chr16_41490019_41490957
          Length = 939

 Score = 1029 bits (532), Expect = 0.0
 Identities = 535/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaaatcaaaaaatttcatgtttataactatttttaaaataggttaagtatctagattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgaaaatcaaaaaatttcatgtttataactatttttaaaataggttaagtatctagattg 677

                                                                       
Query: 61  agcaaaacatgctgaaaatagaatgcggtacactaatgtaaatagaaatgaatgaattag 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agcaaaacatgctgaagatagaatgcggtacactaatgtaaatagaaatgaatgaattag 617

                                                                       
Query: 121 tggttattcagtaaacaagcagcagggacagtccaggatctctccaagatgcaagagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tggttattcagtaaacaagcagcagggacagtccaggatctctccaagatgcaagagatg 557

                                                                       
Query: 181 tctgctctcttctatgcttgtgaaagaaacaatgttgcaatgcagtgttgtccagtaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctgctctcttctatgcttgtgaaagaaacaatgttgcaatgcagtgttgtccagtaact 497

                                                                       
Query: 241 gggtggccttatcagcagcatgggaattggacaaaatagacttgtatctagtaagtctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gggtggccttatcagcagcatgggaattggacaaaatagacttgtatctagtaagtctag 437

                                                                       
Query: 301 tctagtatattgagtaggtcttacataccttgcattaagctatacattcctacatacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctagtatattgagtaggtcttacataccttgcattaagctatacattcctacatacaaa 377

                                                                       
Query: 361 cgtgggctttcccagacacctttgtgaaaatccctgtaagggaaaggcagtaatactatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cgtgggctttcccagacacctttgtgaaaatccctgtaagggaaaggcagtaatactatc 317

                                                                       
Query: 421 agtacaaagagctgaattgcagcttcatggtaaactagaaatagacctatgtttctctaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agtacaaagagctgaattgcagcttcatggtaaactagaaatagacctatgtttctctaa 257

                                                                   
Query: 481 tgtgcgagggcaattttacaaatttacaaattttactctttaccatatatatatat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgtgcgagggcaattttacaaatttacaaattttactctttaccatatatatatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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